Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1350
         (828 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    57   5e-07
UniRef50_Q6LY28 Cluster: Haloacid dehalogenase/epoxide hydrolase...    34   5.0  
UniRef50_A0BNU2 Cluster: Chromosome undetermined scaffold_119, w...    33   6.6  
UniRef50_Q8A551 Cluster: Sensor protein; n=1; Bacteroides thetai...    33   8.7  
UniRef50_Q248E3 Cluster: MATE efflux family protein; n=2; Tetrah...    33   8.7  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = -1

Query: 477  VLTDPSDPITLALDAFSSNTRSRLRDPGS 391
            VLTDPSDPITLALD FSSNTRSRLR PG+
Sbjct: 919  VLTDPSDPITLALDTFSSNTRSRLRSPGN 947


>UniRef50_Q6LY28 Cluster: Haloacid dehalogenase/epoxide
           hydrolase:ATPase, E1-E2 type:Heavy metal
           transport/detoxification protein; n=4;
           Euryarchaeota|Rep: Haloacid dehalogenase/epoxide
           hydrolase:ATPase, E1-E2 type:Heavy metal
           transport/detoxification protein - Methanococcus
           maripaludis
          Length = 723

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 437 TPSALTLGAGLGTPVAVLVKLDKELDVQPN-PCISPLISRRIFSAGRDSDPAVDSFAKQL 261
           TP+A+T+G G G  + +L+K  K  DV  N  C+    +  I     + D  +  ++K+ 
Sbjct: 373 TPTAITVGVGRGAELGILIKDSKVFDVAGNLKCMIFDKTGTITKGEPEVDEIISDYSKEE 432

Query: 260 LLIV 249
           +L++
Sbjct: 433 VLLI 436


>UniRef50_A0BNU2 Cluster: Chromosome undetermined scaffold_119,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_119,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 458

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 782 ISHRFIERRTVEISKDG--RLRRFSV*KKKSAELPICMTHRFGRPFYLS 642
           I H+ I+ + V ++KDG  +L  FS+ KK  A L +      G P+YLS
Sbjct: 113 IVHKDIKMKNVFLTKDGIIKLGDFSISKKLDASLNLTQLDSQGTPYYLS 161


>UniRef50_Q8A551 Cluster: Sensor protein; n=1; Bacteroides
           thetaiotaomicron|Rep: Sensor protein - Bacteroides
           thetaiotaomicron
          Length = 1377

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = -2

Query: 707 KKKSAELPICMTHRFGRPFYLSRS*SSNAIGKRKNNYYLFSIIFFGNLCLWDPISNEILQ 528
           K    +L I MT   G PF+L    S + +   ++ ++L+ +   GNL  +D I+ ++++
Sbjct: 157 KLVKGDLQIEMTVEAGYPFFLDEGESFSNLCASQDGHFLYLVTDKGNLLFFDKIAGKVVR 216

Query: 527 YHNHS 513
              +S
Sbjct: 217 KFKYS 221


>UniRef50_Q248E3 Cluster: MATE efflux family protein; n=2;
           Tetrahymena thermophila SB210|Rep: MATE efflux family
           protein - Tetrahymena thermophila SB210
          Length = 494

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 110 IKEHLLRHNYNI*TCFHDNVFYKVVVHYLILSS 12
           +KE ++   YN  +C  +N+ Y V++HYL L+S
Sbjct: 8   VKELVVSACYNTVSCLFNNLIYLVIIHYLSLNS 40


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,009,862
Number of Sequences: 1657284
Number of extensions: 15278106
Number of successful extensions: 33587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33582
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)