Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1350
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468...    32   0.64 
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453...    29   3.4  
12_02_0502 - 19746100-19746185,19746745-19750474                       29   4.5  

>10_08_0305 -
           16644276-16644290,16644611-16645258,16646764-16646865,
           16646980-16647111,16647574-16648242
          Length = 521

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 521 CGIAVFRCLLDPKGIDSQKKLWKTNNN---CFFFSLLRLTITI 640
           CG+ +F+ LL  K  D   + +KTN+N    FFFS   +TI I
Sbjct: 226 CGVLIFQILLYSKRNDHNLRYFKTNDNNVIRFFFSQEGITIQI 268


>06_01_0623 +
           4536817-4536868,4537129-4537328,4537401-4537609,
           4538531-4538954
          Length = 294

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 560 GIDSQKKLWKTNNNCFFFSLLRLTITID*GRMVYRICASCISVI 691
           G+ SQ+ LWKT         L +T  ++  ++++R+C SC  ++
Sbjct: 123 GMSSQEILWKTVATSTPMRFLHITTKVN--QVLWRVCRSCAGMV 164


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 234 IESHKIAHQLKHEYIILASRSNSARVFNKNFNDI*RCFIFLN 109
           ++ + + H L H+     +R+  ARV + NF D+ R  + L+
Sbjct: 538 MKEYYVLHNLMHDCAQFVARNECARVDDNNFQDVRRTTVHLS 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,811,332
Number of Sequences: 37544
Number of extensions: 392774
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)