Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1350
         (828 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   5.0  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    24   5.0  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -2

Query: 698 SAELPICMTHRFGRPFYLSRS*SSNAIGKRKNNYYLFSIIFFGNLCLWDPISNEILQYHN 519
           S  L  C  H  G P +L    S    G R ++++  S +  G     D + +  L YH+
Sbjct: 407 SESLNTCRLH--GSPTHLHNHRSGG--GGRHHHHHHHSALVRG----MDLMDDMPLPYHD 458

Query: 518 HSHINTTFYP 489
           H+H N+   P
Sbjct: 459 HNHHNSPMSP 468


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 8   LLMIE-LNNVLRLCRIHYRESMSKYY 82
           L+M+E L+  L   R+H+ E MSK+Y
Sbjct: 801 LVMMEGLSAFLHTLRLHWVEFMSKFY 826


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,343
Number of Sequences: 2352
Number of extensions: 16293
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)