Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1350
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025154-1|ABE73324.1|  375|Drosophila melanogaster IP03146p pro...    32   0.83 
AE013599-2140|AAF58091.1|  514|Drosophila melanogaster CG8302-PA...    32   0.83 

>BT025154-1|ABE73324.1|  375|Drosophila melanogaster IP03146p
           protein.
          Length = 375

 Score = 32.3 bits (70), Expect = 0.83
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 648 PQSIVIVKRNREKKKQLLF--VFHNFFWESMPLGS-NKQRNTAIPQSFAYKHNLLSKRLD 478
           P+ + ++  +++   ++ F  + HNF  + +   S +K  N       A+ HNLL K +D
Sbjct: 99  PEDLQVILSSKKHTNKVFFYRLMHNFLGDGLITSSGSKWSNHRRLIQPAFHHNLLEKFID 158

Query: 477 VLTDPSDPITLALDAFSSNT 418
              D S  +   LDA +  T
Sbjct: 159 TFVDASQSLYENLDAEAVGT 178


>AE013599-2140|AAF58091.1|  514|Drosophila melanogaster CG8302-PA
           protein.
          Length = 514

 Score = 32.3 bits (70), Expect = 0.83
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 648 PQSIVIVKRNREKKKQLLF--VFHNFFWESMPLGS-NKQRNTAIPQSFAYKHNLLSKRLD 478
           P+ + ++  +++   ++ F  + HNF  + +   S +K  N       A+ HNLL K +D
Sbjct: 103 PEDLQVILSSKKHTNKVFFYRLMHNFLGDGLITSSGSKWSNHRRLIQPAFHHNLLEKFID 162

Query: 477 VLTDPSDPITLALDAFSSNT 418
              D S  +   LDA +  T
Sbjct: 163 TFVDASQSLYENLDAEAVGT 182


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,958,163
Number of Sequences: 53049
Number of extensions: 686961
Number of successful extensions: 1304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)