Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1350
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 582 NFFWESMPLGSNKQRNTAIPQSFAYKHNLLSK--RLDVL 472
           N FW+  P   +  +N+ +P    YK   + K  ++DV+
Sbjct: 384 NDFWQPKPTLEDAPQNSLLPNFVGYKGKHIGKSGKVDVI 422


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 246 KIQKIESHKIAH--QLKHEYIILASRSNSARVFNKNFNDI*RCFIFLNKRTLI 94
           K+++  S  + H   L++EY++  S      ++  +FND+    +  N   LI
Sbjct: 356 KVKRRISFILVHGFPLEYEYVLAVSNRIQKVIYGFDFNDVNFRILIANVNDLI 408


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 796 KDESISLTDLLKEEQLKYQRMVAYVVFQFKKK 701
           +D  I L    KEE+L+Y+R  A++V Q +++
Sbjct: 21  EDNKIDLRSRTKEERLQYRR-EAWLVQQEREQ 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,809
Number of Sequences: 438
Number of extensions: 4835
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)