Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1350
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil...    31   1.2  
At1g47720.1 68414.m05304 expressed protein contains Pfam PF05329...    29   5.0  
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF...    29   5.0  
At3g53350.1 68416.m05886 myosin heavy chain-related low similari...    28   8.7  

>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 643

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +2

Query: 434 ASNARVIGSD-GSVRTSNLLDRRLCLYANDCGIAVFRCLLDPKGIDSQKKLWKTNNNCFF 610
           AS A  +G+D G V  +++L   + + +   GI V  C+ D K +   K  +  + + F 
Sbjct: 194 ASIAAFVGTDKGEVGLNSVLGGAVFVTSVVVGI-VSLCVAD-KEVKIDKNCFIRDLSFFL 251

Query: 611 FSLLRLTITID*GRMVYRICASCISV 688
           FSL+ L + +  GR+  RI  + +S+
Sbjct: 252 FSLVSLLVILMVGRVTVRIAIAFVSI 277


>At1g47720.1 68414.m05304 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 261

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -1

Query: 615 EKKKQLLFVFHNFFWESMPLGSNKQRNTAIPQSFAYKHNLLSKRLDVLTDPSDPITLALD 436
           E KK  ++++  FF        N+ RN   P+   +KH    + L + +D  D IT  L+
Sbjct: 180 ESKKDEIYLWQVFFSNPYDWWDNR-RNKKNPKQPDFKHKDTGEALWLCSDLPDWITRRLE 238

Query: 435 AFSSNTR 415
            F    R
Sbjct: 239 LFDQKNR 245


>At1g35830.1 68414.m04452 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 302

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 543 QRNTAIPQS-FAYKHNLLSKRLDVLTDPSDPIT 448
           Q  T +P S F++  +  ++R D+   PSDP+T
Sbjct: 126 QEFTGVPASPFSHPFSSTTRRFDIFRSPSDPLT 158


>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
           to filamin-interacting protein S-FILIP [Rattus
           norvegicus] GI:21392397, nonmuscle heavy chain myosin
           II-A [Mus musculus] GI:17978023
          Length = 396

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -2

Query: 368 ELDVQPNPCISPLISRRIFSAGRDSDPAVDSFAK-QLLLIV--KKSKRLNLTKL 216
           EL  + +P  +P + RR+  +G +SDP   + +K Q+  +V  ++S R+ L ++
Sbjct: 12  ELPQKKSPLPAPKVVRRLKPSGAESDPKTKTISKTQIPKVVADRRSARIPLNEI 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,577,856
Number of Sequences: 28952
Number of extensions: 335295
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)