Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1349
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.3  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   4.0  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   7.0  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   7.0  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 452 QRNTRRPRMQKNLSQPTHNAS*S*SEDICSKRYS 351
           +R  +R   +K+ S  TH +S   S+   SKR S
Sbjct: 376 RRKDKREITRKSTSSSTHTSSQQTSDSFLSKRNS 409


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 634 LRMPERTPHQRPCGTVGKRRKRRPPK 557
           L+  E  P  +P  T   RRK RPP+
Sbjct: 244 LKELENPPTPKPRPTKVSRRKPRPPR 269


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 375 GHLLKEIFPDNKSHGGNECNDR 310
           G  LK+  PD  S G  +CN +
Sbjct: 59  GRELKKTLPDALSSGCTKCNQK 80


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 369 LLKEIFPDNKSHGGNECND 313
           +L+++ PD    G  +CND
Sbjct: 59  ILRDVIPDALITGCRKCND 77


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 369 LLKEIFPDNKSHGGNECND 313
           +L+++ PD    G  +CND
Sbjct: 59  ILRDVIPDALITGCRKCND 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,461
Number of Sequences: 336
Number of extensions: 3899
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)