Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1349
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   1.9  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    27   2.5  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   2.5  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   2.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.3  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   4.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   4.4  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    26   5.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.8  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    26   5.8  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   7.6  

>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 255 LPSESVRQPLDDMQPITITLNSQHTAL 175
           LP E + +P+D ++P T TLN   T L
Sbjct: 332 LPDEDIYKPVDKVEPGTRTLNISGTEL 358


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 118 KSWRRV*PSGFYSKASCDRQGGM 186
           K WRR  P GFY+K      GG+
Sbjct: 14  KQWRRDHPFGFYAKPCKSSDGGL 36


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 668 GKPPGLPIAPSTS 630
           G+PP LPI+PSTS
Sbjct: 315 GQPPSLPISPSTS 327


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 88  NGYFRCVWGWKSWRRV*PSGFYSKA 162
           NG F+CV G ++WRR  P  F S A
Sbjct: 182 NGRFQCVCGRQNWRR--PVNFASHA 204


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 649 RSRPPLRMPERTPHQRPCGTVGKRRKRRPPK 557
           R RP L  P   P      ++ KR++ RPPK
Sbjct: 342 RGRPRLERPSGLPLDSKSQSLFKRKRGRPPK 372


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 467 TNSRIQRNTRRPRMQKNLSQPTHNAS 390
           + SR   N RR    KN + PTH+AS
Sbjct: 77  SRSRSSNNKRRTSFGKNGASPTHSAS 102


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 218 ISSKGWRTDSDGRTIACTMM 277
           I+S  WRT S G T  C M+
Sbjct: 852 INSSSWRTTSSGETSFCRML 871


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 529 IAFCFFSIFAWVACAFFAFQRFRMGADAAFAPAYEVEGAIGSPGGF 666
           +A+C  SI   +   FF     R+G    F P + + G IG  G F
Sbjct: 259 LAYCLSSILTGLV--FFILGILRLGRLIEFFPRHILLGCIGGVGSF 302


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 350 GNISLSKCPLIKTRKHYVLADLGFSAFWAFLYFVG 454
           G   LS+   +  R  Y L  +GF  FW   YF G
Sbjct: 111 GFYPLSETRTMHVRCRYRLLGVGFDNFWLVHYFQG 145


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 338 ATEAMNA-MTDIPTP*LHAFVSSLYT 264
           A+E +N  MTD+ T  +H F +SLYT
Sbjct: 859 ASEPINVDMTDVGTQFVHIFHASLYT 884


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/44 (22%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 259 HCVYNDDTNACNY-GVGISVIAFIASVAFIVGEYLFEQMSSDQD 387
           +C+ ++ ++A N  G+ +S++  + ++AF++  Y   + S+ +D
Sbjct: 180 YCIVHNKSSAANIVGIVLSIVVTLGTLAFLIVRYKAIKNSTLED 223


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 23/108 (21%), Positives = 43/108 (39%)
 Frame = +2

Query: 158 RPHVIVRAVCWLFSVIVMGCISSKGWRTDSDGRTIACTMMTQMHVTMVSGYXXXXXXXXX 337
           R +V +R VC L +    G  +   +    + ++ AC ++    + +  GY         
Sbjct: 113 RINVNIRDVCVLLAPAFSGITAIATYYLARELKSDACGLLAAAFMGIAPGYTSRSVAGSY 172

Query: 338 XXXXGNISLSKCPLIKTRKHYVLADLGFSAFWAFLYFVGFCYLSNAWG 481
                 I+L    L+ T   ++ A    S+FW     + + Y+  AWG
Sbjct: 173 DNEAIAITL----LMSTFALWIKAVKSGSSFWGACTGLLYFYMVTAWG 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,069
Number of Sequences: 5004
Number of extensions: 61096
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)