Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1349
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     30   1.5  
07_03_0763 - 21331534-21331779,21331871-21332021,21332093-213323...    30   1.5  
03_04_0174 - 18044516-18046327                                         29   4.5  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    28   6.0  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    28   6.0  
06_01_0908 - 7006160-7007488                                           28   7.9  

>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 371 CPLIKTRKHYVLADLGFSAFWAFLYFVGFCYLSNAWGKTEKPPIGTRTTCR 523
           CPL++ RKH+ +  +  S   A L  +   YL   W K  K    +RT+ +
Sbjct: 654 CPLLENRKHFPVLPISVSLV-AALAILSSLYLLITWHKRTKKGAPSRTSMK 703


>07_03_0763 -
           21331534-21331779,21331871-21332021,21332093-21332330,
           21332449-21332659,21332744-21332871,21333569-21333706,
           21333825-21334644
          Length = 643

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = -1

Query: 629 YAGANAASAPMRNRWKAKKAQATQANMEKKQNAIA----PCMLFAYRSVASQFCPKHWTN 462
           ++G +    P  +   A    A     + K++AI     P +     ++A+ FC   W  
Sbjct: 250 FSGRSLLQLPGPSPSPAPPVTAAGERSKNKRSAILAISMPTIALVLATIAAWFCSTSWRR 309

Query: 461 SRIQRNTRRPRMQKNLSQ 408
            R+ R T RP+  ++  Q
Sbjct: 310 RRLARKTLRPKSSEDEMQ 327


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 656 GLPIAPSTSYAGANAASAPMRN-RWKAK 576
           G P  PS+S AGA A +AP  + RW A+
Sbjct: 163 GSPAVPSSSGAGAGAGAAPSSSGRWAAQ 190


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 467 SNAWGKTEKPPIGTRTTCRALLHSASSPYLLG 562
           S+ +  T   P  T+T C   ++SASSP L G
Sbjct: 499 SSPFAPTISNPFPTQTNCSQFVNSASSPSLFG 530


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 476 WGKTEKPPIGTRTTCRALLHSASS 547
           WG+ E    G RT+CRA L   SS
Sbjct: 61  WGRVEAQNSGARTSCRAALQWLSS 84


>06_01_0908 - 7006160-7007488
          Length = 442

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 676 GRWESLQGFRSRPPLRMPERTPHQRPCGTVGKRRKRRPPKQIWRRS 539
           G+WE   G RS+P  R   +   +R  G     RK +P    W+ S
Sbjct: 5   GKWERCIGGRSKPMSRQRTQEALRRAPGDSEVDRKEKPWAARWKAS 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,871,674
Number of Sequences: 37544
Number of extensions: 463109
Number of successful extensions: 1443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)