Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1349
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8561| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.28 
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)                 29   4.6  
SB_20238| Best HMM Match : Toxin_8 (HMM E-Value=0.66)                  28   8.0  

>SB_8561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 476 WGKTEKPPIGTRTTCRALLHSASSPYLLGWPALSSLSNGS---AWALMRRSLRHTKWRAR 646
           WG TEK   GT     ALL      ++ GW +   L  G        M R LRHT +  +
Sbjct: 139 WGSTEKLRSGTTYHGEALLSPGKYGFVAGWGSTEKLDPGQLPRGHRKMSRVLRHTAFTVQ 198

Query: 647 SEAL 658
            + +
Sbjct: 199 PDRI 202


>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1830

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +1

Query: 220  IIQGLAY*L*WEDHCVYNDD------TNACNYGVGISVIAFIASVAFIVGEYLFEQMSSD 381
            +I GL   + W    V  +D       NA NY    + +A + + AF+ G YL + +S+D
Sbjct: 946  VITGLVAGIGWVGRKVLREDFTKDPSANAMNYAKMTAAVAVLNATAFVGGNYLAKFLSND 1005

Query: 382  Q 384
            +
Sbjct: 1006 E 1006


>SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +2

Query: 365 SKCPLIKTRKHYVLADLGFSAFWAFL--YFVGFCYLSNAWGKTEKPPIGTRTTCR 523
           S C +I T +HY L+ +  S   AF   Y   F Y S   G      I    T R
Sbjct: 231 SSCSIISTLRHYKLSYMAASVILAFFCSYLFAFVYTSVIAGNFTDTTIADEYTTR 285


>SB_20238| Best HMM Match : Toxin_8 (HMM E-Value=0.66)
          Length = 491

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +2

Query: 482 KTEKPPIGTRTTCRALLHSASSPYLLGWP----ALSSLSN-GSAWA 604
           K +   IGT   C++L  +A +  L  WP    +LSS+S+  S WA
Sbjct: 199 KKDTTQIGTNVQCQSLAQTAPTIKLNDWPQLGASLSSVSDTSSCWA 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,242,498
Number of Sequences: 59808
Number of extensions: 498729
Number of successful extensions: 1714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)