Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1349
         (677 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    30   0.077
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         25   2.9  
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    24   5.1  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   8.9  

>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 0.077
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 438 KAQNAEKPKSANT*CFLVLIRGHLLKEIFPDNKS 337
           K + A KP + +  CF  L RGH+++E    N+S
Sbjct: 222 KVREAPKPSAESRRCFRCLERGHMVRECQGTNRS 255


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 619 RTPHQRPCGTVGKRRKRRPPKQIW--RRSRM 533
           R    RP  T   RR  RPP   W  RRSR+
Sbjct: 11  RASPSRPILTTRGRRWPRPPTSCWPSRRSRL 41


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 444 YKKAQNAEKPKSANT*CFLVLIRGHLLKEIFPDNKSHGGNECNDR 310
           Y     A K     T CF  L RGH+      +++S     C D+
Sbjct: 450 YCSVHEAPKVSGQLTRCFRCLERGHIAATCTGEDRSKRCLRCGDQ 494


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 62   DCDTSAVSRASMTQYNLT 9
            DC T+ +    +TQYN T
Sbjct: 951  DCYTTVIPHTVLTQYNYT 968


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,255
Number of Sequences: 2352
Number of extensions: 16713
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)