Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1349
(677 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071753-1|AAL49375.1| 241|Drosophila melanogaster RH60941p pro... 111 1e-24
AE013599-1776|AAF58329.1| 241|Drosophila melanogaster CG10808-P... 111 1e-24
AE013599-2123|AAS64847.1| 524|Drosophila melanogaster CG33464-P... 33 0.27
AE014297-4089|AAN14402.1| 667|Drosophila melanogaster CG31064-P... 30 3.3
AE014297-4088|AAN14401.1| 729|Drosophila melanogaster CG31064-P... 30 3.3
AF279586-1|AAF82381.1| 1384|Drosophila melanogaster TIM2 protein... 29 4.4
AF268472-1|AAF73481.1| 1384|Drosophila melanogaster TIMEOUT prot... 29 4.4
AE014297-1632|AAF54908.3| 1384|Drosophila melanogaster CG7855-PA... 29 4.4
>AY071753-1|AAL49375.1| 241|Drosophila melanogaster RH60941p
protein.
Length = 241
Score = 111 bits (266), Expect = 1e-24
Identities = 50/124 (40%), Positives = 68/124 (54%)
Frame = +2
Query: 134 FDPQAFIQRPHVIVRAVCWLFSVIVMGCISSKGWRTDSDGRTIACTMMTQMHVTMVSGYX 313
FDP F +P V++RA+CWLFSV+V GCISS+GW T+ DG+ M +
Sbjct: 25 FDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGW-TEKDGKEYCLYNGDGMACKYGNMVG 83
Query: 314 XXXXXXXXXXXXGNISLSKCPLIKTRKHYVLADLGFSAFWAFLYFVGFCYLSNAWGKTEK 493
G + +K+RK YV+AD+GFSA W F+YFV F YL + W +
Sbjct: 84 VFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSAP 143
Query: 494 PPIG 505
PP+G
Sbjct: 144 PPLG 147
Score = 87.4 bits (207), Expect = 2e-17
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +1
Query: 253 EDHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSDQD*EALCVG*LRFFCIL 432
+++C+YN D AC YG + V F+AS+ F+ GE+LFE+MSS + + + + F +
Sbjct: 64 KEYCLYNGDGMACKYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALW 123
Query: 433 GLLVF-RWILLFVQCLGQN*EATDRYANNMQGAIAFCFFSIFAWVACAFFAFQRFRMGAD 609
+ F ++ L+ Q A +M+ AI FC FSI +W CA A++RF +GA
Sbjct: 124 TFMYFVAFLYLWSQWSSSAPPPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIGAG 183
Query: 610 AAFAPAYEVEGA 645
F A+E + A
Sbjct: 184 DEFTSAFETDPA 195
>AE013599-1776|AAF58329.1| 241|Drosophila melanogaster CG10808-PA
protein.
Length = 241
Score = 111 bits (266), Expect = 1e-24
Identities = 50/124 (40%), Positives = 68/124 (54%)
Frame = +2
Query: 134 FDPQAFIQRPHVIVRAVCWLFSVIVMGCISSKGWRTDSDGRTIACTMMTQMHVTMVSGYX 313
FDP F +P V++RA+CWLFSV+V GCISS+GW T+ DG+ M +
Sbjct: 25 FDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGW-TEKDGKEYCLYNGDGMACKYGNMVG 83
Query: 314 XXXXXXXXXXXXGNISLSKCPLIKTRKHYVLADLGFSAFWAFLYFVGFCYLSNAWGKTEK 493
G + +K+RK YV+AD+GFSA W F+YFV F YL + W +
Sbjct: 84 VFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSAP 143
Query: 494 PPIG 505
PP+G
Sbjct: 144 PPLG 147
Score = 87.4 bits (207), Expect = 2e-17
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +1
Query: 253 EDHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSDQD*EALCVG*LRFFCIL 432
+++C+YN D AC YG + V F+AS+ F+ GE+LFE+MSS + + + + F +
Sbjct: 64 KEYCLYNGDGMACKYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALW 123
Query: 433 GLLVF-RWILLFVQCLGQN*EATDRYANNMQGAIAFCFFSIFAWVACAFFAFQRFRMGAD 609
+ F ++ L+ Q A +M+ AI FC FSI +W CA A++RF +GA
Sbjct: 124 TFMYFVAFLYLWSQWSSSAPPPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIGAG 183
Query: 610 AAFAPAYEVEGA 645
F A+E + A
Sbjct: 184 DEFTSAFETDPA 195
>AE013599-2123|AAS64847.1| 524|Drosophila melanogaster CG33464-PA
protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.27
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 531 NSALHVVRVPIGGFSVLPQALDK*QNPTKYKKAQNAEKP 415
N A+ ++ P+G S++ Q DK Q+P K + Q +KP
Sbjct: 138 NDAIKIISTPLGKVSIVYQQTDKDQSPDKDAQQQQQKKP 176
>AE014297-4089|AAN14402.1| 667|Drosophila melanogaster CG31064-PA,
isoform A protein.
Length = 667
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 662 PPGLPIAPSTSYAGANAASAPMRNRWKAKKAQATQANME-KKQNAIAPCML 513
PP +P+AP T + +AS+P ++ KAK+ + + E ++ N + C L
Sbjct: 95 PPVVPVAPDT--VASASASSPSPSKLKAKRLKRARDTAEIERSNLVNICKL 143
>AE014297-4088|AAN14401.1| 729|Drosophila melanogaster CG31064-PB,
isoform B protein.
Length = 729
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 662 PPGLPIAPSTSYAGANAASAPMRNRWKAKKAQATQANME-KKQNAIAPCML 513
PP +P+AP T + +AS+P ++ KAK+ + + E ++ N + C L
Sbjct: 95 PPVVPVAPDT--VASASASSPSPSKLKAKRLKRARDTAEIERSNLVNICKL 143
>AF279586-1|AAF82381.1| 1384|Drosophila melanogaster TIM2 protein
protein.
Length = 1384
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 199 AEQPTYRPDDHMRPLNKSLRVKRASSFSTPIRTGSIHFSTPQLDN 65
AE+P + + +P +K +V++ TP+ G+I Q+D+
Sbjct: 981 AEEPMFEDQGYKKPKSKPKKVQKRQMVRTPLDVGTIRALIGQVDS 1025
>AF268472-1|AAF73481.1| 1384|Drosophila melanogaster TIMEOUT protein.
Length = 1384
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 199 AEQPTYRPDDHMRPLNKSLRVKRASSFSTPIRTGSIHFSTPQLDN 65
AE+P + + +P +K +V++ TP+ G+I Q+D+
Sbjct: 981 AEEPMFEDQGYKKPKSKPKKVQKRQMVRTPLDVGTIRALIGQVDS 1025
>AE014297-1632|AAF54908.3| 1384|Drosophila melanogaster CG7855-PA
protein.
Length = 1384
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 199 AEQPTYRPDDHMRPLNKSLRVKRASSFSTPIRTGSIHFSTPQLDN 65
AE+P + + +P +K +V++ TP+ G+I Q+D+
Sbjct: 981 AEEPMFEDQGYKKPKSKPKKVQKRQMVRTPLDVGTIRALIGQVDS 1025
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,766,820
Number of Sequences: 53049
Number of extensions: 747206
Number of successful extensions: 2530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2522
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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