Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1349
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40417-10|AAA81418.2| 247|Caenorhabditis elegans Synaptogyrin f... 44 1e-04
AF079373-1|AAC27798.1| 247|Caenorhabditis elegans synaptogyrin ... 44 1e-04
AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical ... 37 0.015
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical ... 29 4.0
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.0
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 28 5.3
U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchanger... 27 9.3
U64605-4|AAF98600.1| 249|Caenorhabditis elegans Hypothetical pr... 27 9.3
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 27 9.3
AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calciu... 27 9.3
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 27 9.3
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 27 9.3
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 27 9.3
>U40417-10|AAA81418.2| 247|Caenorhabditis elegans Synaptogyrin
family protein 1 protein.
Length = 247
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = +2
Query: 134 FDPQAFIQRPHVIVRAVCWLFSVIVMGCISSKGWRTDSDGRTIACTM-MTQMHVTMVSGY 310
FD F ++P V+ R LF +I+ +S GW SD C + + +
Sbjct: 16 FDKNTFFKKPTVLFRCAALLFGLILWYSVSKGGWHKPSDAIHPVCLYGRSSSTCSFATAV 75
Query: 311 XXXXXXXXXXXXXGNISLSKCPLIKTRKHYVLADLGFSAFWAFLYFVGF 457
+ + + + TR+ VLADL SA + ++ +GF
Sbjct: 76 GFFAVCGAIVLIVLDAKMDQISSVPTRRRAVLADLVVSAIFTAIFLIGF 124
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Frame = +1
Query: 262 CVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSDQD*EALCVG*LRFFCI---- 429
C+Y ++ C++ + A ++ IV + +Q+SS + L I
Sbjct: 60 CLYGRSSSTCSFATAVGFFAVCGAIVLIVLDAKMDQISSVPTRRRAVLADLVVSAIFTAI 119
Query: 430 --LGLLVFRWILLFVQCLGQN*EATDRYANNMQGAIAFCFFSIFAWVACAFFAFQRFRMG 603
+G F W L + ++ E + NN + I S AW AFFA++R+ G
Sbjct: 120 FLIGFFTF-WSKLSAFEVDEDDENPIK-TNNAKFGILSALLSFLAWGGAAFFAWRRYEEG 177
Query: 604 ADAAFAPAYE 633
A P Y+
Sbjct: 178 NQATHEPNYD 187
>AF079373-1|AAC27798.1| 247|Caenorhabditis elegans synaptogyrin
homolog protein.
Length = 247
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = +2
Query: 134 FDPQAFIQRPHVIVRAVCWLFSVIVMGCISSKGWRTDSDGRTIACTM-MTQMHVTMVSGY 310
FD F ++P V+ R LF +I+ +S GW SD C + + +
Sbjct: 16 FDKNTFFKKPTVLFRCAALLFGLILWYSVSKGGWHKPSDAIHPVCLYGRSSSTCSFATAV 75
Query: 311 XXXXXXXXXXXXXGNISLSKCPLIKTRKHYVLADLGFSAFWAFLYFVGF 457
+ + + + TR+ VLADL SA + ++ +GF
Sbjct: 76 GFFAVCGAIVLIVLDAKMDQISSVPTRRRAVLADLVVSAIFTAIFLIGF 124
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Frame = +1
Query: 262 CVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSDQD*EALCVG*LRFFCI---- 429
C+Y ++ C++ + A ++ IV + +Q+SS + L I
Sbjct: 60 CLYGRSSSTCSFATAVGFFAVCGAIVLIVLDAKMDQISSVPTRRRAVLADLVVSAIFTAI 119
Query: 430 --LGLLVFRWILLFVQCLGQN*EATDRYANNMQGAIAFCFFSIFAWVACAFFAFQRFRMG 603
+G F W L + ++ E + NN + I S AW AFFA++R+ G
Sbjct: 120 FLIGFFTF-WSKLSAFEVDEDDENPIK-TNNAKFGILSALLSFLAWGGAAFFAWRRYEEG 177
Query: 604 ADAAFAPAYE 633
A P Y+
Sbjct: 178 NQATHEPNYD 187
>AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical
protein Y119C1B.12 protein.
Length = 166
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 277 DTNACNYGVGISVIAFIASVAFIVGE-YLFEQMSSDQD*EALCVG*LRFFCILGLLVFRW 453
D N + + ++++ VA I+G ++F S + + L +CILGL+VF
Sbjct: 94 DINYTVFNLALTIVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYWTSFIYCILGLIVFAI 153
Query: 454 ILLFVQCLGQ 483
+LL V C+ +
Sbjct: 154 LLLVVCCVAR 163
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -2
Query: 676 GRWESLQGFRSRPPLRMPERTPHQRPCGTVGKRRKRRPPKQIWRRSRMQ*RPACCSRTDR 497
GR S RSR R +R + + K R R PPK+ R S+ + R SR+
Sbjct: 204 GRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSAD 263
Query: 496 WLLSFAPS 473
S +PS
Sbjct: 264 NRKSRSPS 271
>AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical
protein T25D3.4 protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 217 AAHNNHAEQPTYRPDDHMRPLNKSLRVKRASS 122
AAH+N+++ P PDD + P + L K S
Sbjct: 11 AAHSNNSQLPKVNPDDRLSPNTRVLITKLEDS 42
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 649 RSRPPLRMPERTPHQRPCGTVGKRRKRRPPKQIWRRS 539
R R P+R P +P +R ++R R PP++ RRS
Sbjct: 79 RKREPIRAPSASPPRRRRDDSPRKRSRSPPRRT-RRS 114
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -2
Query: 655 GFRSRPPLRMPERTPHQRPCGTVGKRRKRRPPKQIWRRSRMQ*R-PACCSRTDRWLLSFA 479
G SR R P P +RP R + R P + W R+R + R A S T W LS +
Sbjct: 344 GRHSRSRSRSP---PRKRPVRRSRSRSRSRTPNRNWTRARSRTRSQAKSSSTLTWPLSPS 400
Query: 478 PSIGQIAESN 449
S E N
Sbjct: 401 RSRSNSNERN 410
>U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformb protein.
Length = 925
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = -3
Query: 624 RSERRISAHAEPLESEESAGHPS-KYGEEAECNSALHVVRVPIGGFSVLPQALDK*QNPT 448
R R+ + H P E ++ A + G ++ + R IGG ++ + +DK N
Sbjct: 291 REIRKQNPHITPTELQKQAEYEMISRGPKSRAFYRVQATRRLIGGGDIVKKRIDKEHNKA 350
Query: 447 KYKKAQNAEKPKSANT*CFLVLIRGH 370
Q EK NT C + L H
Sbjct: 351 LDALVQAQEKQSRDNT-CKIFLDPAH 375
>U64605-4|AAF98600.1| 249|Caenorhabditis elegans Hypothetical
protein C05D9.7 protein.
Length = 249
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 617 NAASAPMRNRWKAKKAQATQANMEKKQNAIAPCMLFAYRSVA 492
N +SAPMR + + +Q K++++ A C+ F Y ++A
Sbjct: 40 NPSSAPMRREPEQGTSAKSQRGSGKEESSSAHCISFIYCALA 81
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
2 protein.
Length = 1668
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 3 GGGQVILGH*CTANCTSITIKLSNCGVLKWILPVRMGVEKLEARLTLRLLFK 158
GG + + + + T T+KL N V+KW+ + + EA +R + +
Sbjct: 151 GGQTITICNQVISEATQNTVKLKNAHVVKWVWATLLALSAPEALCFVRSMHR 202
>AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 925
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = -3
Query: 624 RSERRISAHAEPLESEESAGHPS-KYGEEAECNSALHVVRVPIGGFSVLPQALDK*QNPT 448
R R+ + H P E ++ A + G ++ + R IGG ++ + +DK N
Sbjct: 291 REIRKQNPHITPTELQKQAEYEMISRGPKSRAFYRVQATRRLIGGGDIVKKRIDKEHNKA 350
Query: 447 KYKKAQNAEKPKSANT*CFLVLIRGH 370
Q EK NT C + L H
Sbjct: 351 LDALVQAQEKQSRDNT-CKIFLDPAH 375
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 3 GGGQVILGH*CTANCTSITIKLSNCGVLKWILPVRMGVEKLEARLTLRLLFK 158
GG + + + + T T+KL N V+KW+ + + EA +R + +
Sbjct: 151 GGQTITICNQVISEATQNTVKLKNAHVVKWVWATLLALSAPEALCFVRSMHR 202
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 391 EALCVG*LRFFCILGLLVFR-WILLFVQCL 477
+A+C+ L FC++ +L+F W + C+
Sbjct: 1140 QAICIIALAVFCVISILMFNPWAATLIMCI 1169
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 391 EALCVG*LRFFCILGLLVFR-WILLFVQCL 477
+A+C+ L FC++ +L+F W + C+
Sbjct: 1137 QAICIIALAVFCVISILMFNPWAATLIMCI 1166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,896
Number of Sequences: 27780
Number of extensions: 363874
Number of successful extensions: 1031
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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