Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1349
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    27   0.16 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    27   0.16 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 375 GHLLKEIFPDNKSHGGNECNDR 310
           G  LK+I PD  S G N+CN++
Sbjct: 57  GRELKKILPDALSTGCNKCNEK 78


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 375 GHLLKEIFPDNKSHGGNECNDR 310
           G  LK+I PD  S G N+CN++
Sbjct: 57  GRELKKILPDALSTGCNKCNEK 78


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 175  DDHMRPLNKSLRVKRASSFSTPIRT 101
            +DH RPL++ +     S +ST  RT
Sbjct: 1324 EDHRRPLSEHIYSSIDSDYSTLERT 1348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,445
Number of Sequences: 438
Number of extensions: 4388
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)