Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1349
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29770.1 68417.m04239 expressed protein                             30   1.6  
At2g33205.1 68415.m04068 TMS membrane family protein / tumour di...    29   2.1  
At4g19120.2 68417.m02822 early-responsive to dehydration stress ...    28   4.9  
At4g19120.1 68417.m02821 early-responsive to dehydration stress ...    28   4.9  
At3g05210.1 68416.m00568 nucleotide repair protein, putative sim...    28   4.9  
At5g48040.1 68418.m05936 hypothetical protein                          28   6.5  
At3g17900.1 68416.m02280 expressed protein                             28   6.5  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   8.6  

>At4g29770.1 68417.m04239 expressed protein
          Length = 277

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -1

Query: 641 PSTSYAGANAASAPMRNRWKAKKAQATQANMEKKQNAIAPCMLFAYR 501
           PS  Y   N  S  + N W  K+ +  + + ++++  +  C  FA++
Sbjct: 80  PSCQYTVGNLLSYLVENVWTKKEVRQREMDQQRREFTVKDCFEFAFK 126


>At2g33205.1 68415.m04068 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 421

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 211 GLHIIQGLAY*L*WEDHCV-YNDDTNACNYGVGISVIAFIASVAFIVGEYLF 363
           GL ++  + +   W ++ +  N    +C++G+ +S++ +I SV  I   Y F
Sbjct: 168 GLQLVSVIEFITWWNNYWMPQNQSKQSCSFGLVMSIVFYIGSVCGIAVMYYF 219


>At4g19120.2 68417.m02822 early-responsive to dehydration stress
           protein (ERD3) identical to ERD3 protein [Arabidopsis
           thaliana] GI:15320410; contains Pfam profile PF03141:
           Putative methyltransferase; identical to cDNA  ERD3
           GI:15320409
          Length = 600

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 665 KPPGLPIAPSTSYAGANAASAPMRNRWKAKKAQATQANMEKK 540
           +P G  I   +SY   + AS     RW  +K Q   A+  +K
Sbjct: 540 RPSGYAIIRESSYFADSIASVAKELRWSCRKEQTESASANEK 581


>At4g19120.1 68417.m02821 early-responsive to dehydration stress
           protein (ERD3) identical to ERD3 protein [Arabidopsis
           thaliana] GI:15320410; contains Pfam profile PF03141:
           Putative methyltransferase; identical to cDNA  ERD3
           GI:15320409
          Length = 600

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 665 KPPGLPIAPSTSYAGANAASAPMRNRWKAKKAQATQANMEKK 540
           +P G  I   +SY   + AS     RW  +K Q   A+  +K
Sbjct: 540 RPSGYAIIRESSYFADSIASVAKELRWSCRKEQTESASANEK 581


>At3g05210.1 68416.m00568 nucleotide repair protein, putative
           similar to nucleotide repair protein [Lilium
           longiflorum] GI:3297891, SP|P07992 DNA excision repair
           protein ERCC-1 {Homo sapiens}; contains Pfam profile
           PF00633: Helix-hairpin-helix motif
          Length = 410

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 130 ASSFSTPIRTGSIHFSTPQLDNLIVI 53
           ASS STP+ TGS+  +T Q  N I++
Sbjct: 103 ASSSSTPVATGSVPSNTTQNRNAILV 128


>At5g48040.1 68418.m05936 hypothetical protein
          Length = 422

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 10  VKLYWVIDARLTALVSQSSYLIAVC 84
           VKL WV D  L A+V +  +L AVC
Sbjct: 35  VKLKWVKDRELDAVVVREKHLRAVC 59


>At3g17900.1 68416.m02280 expressed protein
          Length = 838

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = -1

Query: 668 GKPPGLPIAPSTSYAGANAASAPMRNRWKAKKAQATQANMEKKQNAIAPCMLFAYRSVAS 489
           G+     + P+ S  G+N   +  RN+ K+        N E+K + ++      Y  + S
Sbjct: 563 GEEHSFIVKPAFS-VGSNLKPSAARNKLKSSSLSLPTVNFERKGSGLSGDQ---YAVMVS 618

Query: 488 QFCPKHWTNSRI---QRNTRRPRMQKNL 414
             C  ++T SR+   QR   RPR+ ++L
Sbjct: 619 --CRCNYTESRLFFKQRTKWRPRVSRDL 644


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 649 RSRPPLRMPERTPHQRPCGTVGKRRKRRPPKQIWRRSRMQ*RPA 518
           RSR P+R   R  H+    +    R+RR P    RR R    PA
Sbjct: 284 RSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPA 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,977
Number of Sequences: 28952
Number of extensions: 344590
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)