Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1347X
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.0  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   3.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   4.1  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   5.5  
AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4 p...    21   5.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +2

Query: 296 HYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRVGI 454
           +YG   +   Q Y     + +H A    P G+ T+V     KL      + G+
Sbjct: 96  YYGPQQQMDGQEYRPDSPSSMHMANTAAPNGHQTQVVYASCKLQAAAVTQNGV 148


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 275 DTIFHNLHYGDLSKSREQVYAASRLAELHDAV 370
           DT+  NL        +E  Y   RLA   D+V
Sbjct: 22  DTLAKNLGINSSFVHKEHCYVLVRLARFRDSV 53


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 137 NGPTVVPILRTAVREH 184
           + PT  PI+R A+R+H
Sbjct: 97  SAPTGPPIVRCALRKH 112


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 452 CPRAASRPRTASGRARRPPYHSPW 381
           CP+A SRP    G  R      P+
Sbjct: 13  CPKAFSRPWLLQGHIRTHTGEKPF 36


>AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4
           protein.
          Length = 23

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 434 RPRTASGRARR 402
           RP T+SGR RR
Sbjct: 11  RPETSSGRRRR 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,016
Number of Sequences: 336
Number of extensions: 1709
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)