Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1347X
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 87 9e-19
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 78 7e-16
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 59 4e-10
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 58 5e-10
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 41 8e-05
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 36 0.002
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 35 0.005
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 35 0.005
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 35 0.007
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 34 0.012
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 31 0.084
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 30 0.19
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 28 0.59
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 28 0.59
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 2.4
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 26 2.4
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 26 3.1
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 4.2
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 4.2
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 5.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 5.5
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 25 7.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 7.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 24 9.6
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 87.4 bits (207), Expect = 9e-19
Identities = 36/67 (53%), Positives = 52/67 (77%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
+D LF+DTI +N+ Y S + E++YAA++ A++HD +L +P GY++ VGERGLKLSGG
Sbjct: 665 QDSTLFNDTILYNIKYAKPSATNEEIYAAAKAAQIHDRILQFPDGYNSRVGERGLKLSGG 724
Query: 434 EKQRVGI 454
EKQRV +
Sbjct: 725 EKQRVAV 731
Score = 56.4 bits (130), Expect = 2e-09
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 18 FRDVNFKYVNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIFING 197
F V+F Y KP+ ++++F ST++R+L RFF+ SG+I I+
Sbjct: 586 FSHVSFAYDPRKPVLSDINFVAQPGKVIALVGESGGGKSTIMRILLRFFDVNSGSITIDD 645
Query: 198 QNIRDVDLVSLRKAIAVVP 254
Q+IR+V L SLR +I VVP
Sbjct: 646 QDIRNVTLSSLRSSIGVVP 664
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 77.8 bits (183), Expect = 7e-16
Identities = 31/67 (46%), Positives = 51/67 (76%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
+D LF+DTI +N+ YG+ S +++ A++ A++HD + ++P+GY T+VGERGL +SGG
Sbjct: 524 QDTPLFNDTILYNIGYGNPKASNDEIVEAAKKAKIHDIIESFPEGYQTKVGERGLMISGG 583
Query: 434 EKQRVGI 454
EKQR+ +
Sbjct: 584 EKQRLAV 590
Score = 68.5 bits (160), Expect = 5e-13
Identities = 34/82 (41%), Positives = 48/82 (58%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+I+F +V+F Y +PI N SF+IP ST++RLL+RF++ SG I
Sbjct: 442 SIQFDNVHFSYNPNRPILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKIL 501
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
I+ Q + + L SLRKAI VVP
Sbjct: 502 IDNQRLDQITLNSLRKAIGVVP 523
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 58.8 bits (136), Expect = 4e-10
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 9/76 (11%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYG-------DLSKSR--EQVYAASRLAELHDAVLTWPKGYDTEVG 406
++ VLF T+F N+ YG LSK +VY A++LA +D ++T P+ + T VG
Sbjct: 503 QEPVLFATTVFENITYGLPDTIKGTLSKEELERRVYDAAKLANAYDFIMTLPEQFSTNVG 562
Query: 407 ERGLKLSGGEKQRVGI 454
+RG +SGG+KQR+ I
Sbjct: 563 QRGFLMSGGQKQRIAI 578
Score = 52.8 bits (121), Expect = 2e-08
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYG-DLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
S++ L+ T+ N+ G S E++ A + A +H+ +L P GY+T G++G LS
Sbjct: 1201 SQEPTLYQGTVRENIVLGASKDVSEEEMIEACKKANIHEFILGLPNGYNTLCGQKGSSLS 1260
Query: 428 GGEKQRVGI 454
GG+KQR+ I
Sbjct: 1261 GGQKQRIAI 1269
Score = 46.0 bits (104), Expect = 3e-06
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 TATIEFRDVNFKYVNGKPI--FNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQS 176
+A IEFR V F Y + I L+ ++ ST + L+ RF++ +
Sbjct: 1116 SAAIEFRQVEFSYPTRRHIKVLRGLNLTVKPGQFVAFVGSSGCGKSTTIGLIERFYDCDN 1175
Query: 177 GNIFINGQNIRDVDLVSLRKAIAVV 251
G + ++G N+RD ++ RK IA+V
Sbjct: 1176 GAVLVDGVNVRDYNINDYRKQIALV 1200
Score = 44.8 bits (101), Expect = 6e-06
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPIF--NNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IE +++ F Y + +N S P ST++ L+ RF++P G +
Sbjct: 420 IELKNIRFVYPTRPEVLVLDNFSLVCPSGKITALVGASGSGKSTIIGLVERFYDPIGGQV 479
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
F++G+++R +++ SLR I++V
Sbjct: 480 FLDGKDLRTLNVASLRNQISLV 501
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 58.4 bits (135), Expect = 5e-10
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ VLF TI N+ YG + S+E++ A++ A VL++P+ + T+VG RGL+LSGG
Sbjct: 565 QEPVLFSGTIGENIAYGKSNASQEEIEDAAKRANC-SFVLSFPEKWSTQVGTRGLQLSGG 623
Query: 434 EKQRVGI 454
+KQR+ I
Sbjct: 624 QKQRIAI 630
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 41.1 bits (92), Expect = 8e-05
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
I+F + +Y P + N++S +I ST+ L+R EP SG+I
Sbjct: 1224 IKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSGDIQ 1283
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
++ NI + L LR +A++P
Sbjct: 1284 LDDINITSIGLHDLRSRLAIIP 1305
Score = 33.9 bits (74), Expect = 0.012
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 386 GYDTEVGERGLKLSGGEKQRVGI 454
G TEVGE+G+ LSGG+K R+ +
Sbjct: 694 GDQTEVGEKGISLSGGQKARISL 716
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 36.3 bits (80), Expect = 0.002
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
I+F+DV+F Y G IF+ L+F + +T+++L+ +P +G++
Sbjct: 594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSV 651
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 35.1 bits (77), Expect = 0.005
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 63 NNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIFINGQNIRDVDLVSLRKAI 242
NN++ I ST+ L+R EP G I I+ ++I L LR +
Sbjct: 1244 NNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEIDNEDITKFGLYDLRSRL 1303
Query: 243 AVVP 254
+++P
Sbjct: 1304 SIIP 1307
Score = 32.3 bits (70), Expect = 0.036
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 383 KGYDTEVGERGLKLSGGEKQRVGI 454
+G TEVG++G LSGG+K R+ +
Sbjct: 691 EGDQTEVGQKGASLSGGQKSRISL 714
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 35.1 bits (77), Expect = 0.005
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSG 179
++ DVNF+YV G PI ++ + STM++LL P SG
Sbjct: 518 LQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSG 573
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 34.7 bits (76), Expect = 0.007
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +3
Query: 18 FRDVNFKYVN-GKPIFN--NLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
F +V+F Y + + +F+ N+S IP ST + LL R+F P GNI+
Sbjct: 435 FDNVSFAYPSRDENLFSLINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIY 494
Query: 189 INGQNIRDVDLVSLRKAIAVV 251
++ + ++D L I +V
Sbjct: 495 LDDFPLEEIDEHVLGSTITLV 515
Score = 34.7 bits (76), Expect = 0.007
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 263 VLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQ 442
V+F TI N+ + + S RLA + + LT+ + YDT E LSGG++Q
Sbjct: 520 VIFDMTIRENIIMRNENASESDFEEVCRLALVDEFALTFDQSYDTPCKE--ASLSGGQQQ 577
Query: 443 RVGI 454
R+ +
Sbjct: 578 RIAL 581
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 266 LFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQR 445
L TI +L YG + + V A + + + P G DT + E SGG+ QR
Sbjct: 1185 LLGSTILESLLYG-VDRDINSVMDALDKTYMTEVIQNLPNGLDTPLLEFSKNFSGGQIQR 1243
Query: 446 V 448
+
Sbjct: 1244 L 1244
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 33.9 bits (74), Expect = 0.012
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +2
Query: 395 TEVGERGLKLSGGEKQRVGI 454
TE+GE+G+ LSGG+KQR+ +
Sbjct: 731 TEIGEKGVTLSGGQKQRIAL 750
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 31.1 bits (67), Expect = 0.084
Identities = 25/108 (23%), Positives = 44/108 (40%)
Frame = +2
Query: 74 LLDPGRRQDRHRGRLGLRKIHNGPTVVPILRTAVREHIHQRTEHPGRGPG*LEEGHRSRS 253
LL+ + R + L RK H + L T E Q+ + + E+ +R
Sbjct: 456 LLEKISKNKRLKFELNDRKSHASQMRMKSLATLASEQPIQKRKRKDQS----EDNFGARD 511
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDT 397
ED ++HD + + K +Q+Y+ + +D+ T YDT
Sbjct: 512 EDWKVYHDVLTAEQLEEERKKLLDQIYSLEKQLLEYDSQFTQANTYDT 559
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 29.9 bits (64), Expect = 0.19
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 254 RNDCDGLPQANQVHVPDVLSVDEY 183
RND L + N VHVP++ SV+E+
Sbjct: 565 RNDLHQLAKKNSVHVPELYSVEEH 588
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 28.3 bits (60), Expect = 0.59
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 341 SRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRVGI 454
+R+ +L+ A + W Y+T + GL +SGGE+++ +
Sbjct: 317 TRIDQLNYAAI-WQPHYNTCIANIGLTVSGGEREQAAV 353
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 0.59
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 242 DGLPQANQVHVPDVLSVDEYVPGLRFEESVQQSDH 138
+ LP + H P+ LS ++ V LRF S+ Q+ H
Sbjct: 142 ESLPLLEEDHKPESLSKEQEVERLRFSGSMVQNPH 176
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.2 bits (55), Expect = 2.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 266 LFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQR 445
L + TI N+ +G+ E+ + + L + + G T + G LSGG+KQR
Sbjct: 656 LRNGTIRSNILFGE-PYDEERYFQIIKACCLDSDLNSMNDGDLTYIHSNGSSLSGGQKQR 714
Query: 446 VGI 454
V +
Sbjct: 715 VSL 717
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = -2
Query: 157 RYNSRTIVDFPEPEPPTMP-----ILAPAGIEKLRLLNIGFPFTY 38
RY + P E P + IL P+ +EKL LN+ +P +
Sbjct: 35 RYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLF 79
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 139 IVDFPEPEPPTMPILAPAGIEKLRLLN 59
I D EP P P+ A AG++ L+ L+
Sbjct: 465 IKDTLEPNTPHKPLAADAGLDSLKFLD 491
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 380 PKGYDTEVGERGLKLSGGEKQRVGI 454
P D + + L LSGGE QRV I
Sbjct: 442 PLSIDNIIDQEVLNLSGGELQRVAI 466
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 4.2
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 311 SGLRSAGCGISCRGTARSPRNDCDGLPQANQVHVPDVLSVDEYVP---GLRFEESVQQS 144
+G S+G GT + RND +PQ QV+ + ++ D + FEES +QS
Sbjct: 41 TGRGSSGTSTE-HGTFKKGRNDAPDVPQWKQVNAKNPVARDIFARLDLENMFEESSKQS 98
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 181 FPDCGSKNRYNSRTIVDFPEPEPPTMPIL 95
F C S + Y I + PEPP+ IL
Sbjct: 3 FHGCLSTDEYEPELIEKYGNPEPPSSSIL 31
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 159 FFEPQSGNIFINGQNI 206
FFEP + N++IN N+
Sbjct: 1088 FFEPNTENVYINSYNL 1103
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 104 HRGRLGLRKIHNGPTVVPILRTAVREHIHQRTEHP 208
H GR + ++ GPT L+ V + IH R P
Sbjct: 1065 HTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGP 1099
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 221 G*LEEGHRSRSEDCVLFHDTIFHNLHYGDLSKSREQVYAA 340
G E S +E ++HD + +++Y DL K E + A+
Sbjct: 24 GLANEASLSANEVQDIYHDFVATSINYADLLKRNEDLNAS 63
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 449 PRAASRPRTASGRARRPPY 393
PR SR R+ GR+R P Y
Sbjct: 141 PRYRSRSRSPDGRSRSPDY 159
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 83 DREAEVVEYRLPVHVLEVHVSELYRGR 3
DRE EV+ LP + ++ E+Y R
Sbjct: 797 DRETEVLRIELPSSIAHHNLDEIYAER 823
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,225
Number of Sequences: 5004
Number of extensions: 28624
Number of successful extensions: 123
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -