Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1347X
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   2.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.4  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 159 FFEPQSGNIFINGQNIR 209
           +F+P+ GN  ING N +
Sbjct: 218 YFDPRYGNYNINGFNFQ 234


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 169 GSKNRYNSRTIVDFPEPE 116
           G + R+N++T+VD   P+
Sbjct: 15  GGQARFNNQTVVDKVPPD 32


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 296 HYGDLSKSREQVYAASRLAELHDAVLT 376
           H+G  S ++E + AA      HD  LT
Sbjct: 405 HHGSKSWTQEDMDAALEALRNHDMSLT 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,847
Number of Sequences: 438
Number of extensions: 2503
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)