Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1347X
(455 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28620.1 68417.m04092 ABC transporter family protein identica... 95 2e-20
At4g28630.1 68417.m04093 ABC transporter family protein identica... 95 2e-20
At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA... 93 6e-20
At4g18050.1 68417.m02686 ABC transporter family protein contains... 71 5e-13
At5g46540.1 68418.m05730 ABC transporter family protein contains... 70 9e-13
At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu... 68 3e-12
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 67 6e-12
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 66 1e-11
At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein, pu... 66 1e-11
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 65 2e-11
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu... 64 3e-11
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu... 64 6e-11
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 63 7e-11
At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu... 62 1e-10
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 62 2e-10
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 62 2e-10
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 62 2e-10
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 61 3e-10
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 61 3e-10
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 61 4e-10
At4g25450.1 68417.m03665 ABC transporter family protein similar ... 60 7e-10
At5g39040.1 68418.m04724 ABC transporter (TAP2) TAP-like ABC tra... 59 1e-09
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 59 2e-09
At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein, pu... 58 2e-09
At3g55320.1 68416.m06144 ABC transporter family protein similar ... 56 1e-08
At2g39480.1 68415.m04845 ABC transporter family protein related ... 56 1e-08
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type... 55 2e-08
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr... 47 7e-06
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 46 2e-05
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 44 4e-05
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 44 4e-05
At2g07680.1 68415.m00992 ABC transporter family protein 43 9e-05
At3g13080.1 68416.m01635 ABC transporter family protein almost i... 42 2e-04
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter... 42 2e-04
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 42 2e-04
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 42 3e-04
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter... 40 6e-04
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta... 40 0.001
At3g21250.1 68416.m02685 ABC transporter family protein similar ... 40 0.001
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 39 0.001
At3g13100.1 68416.m01640 ABC transporter family protein similar ... 39 0.002
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4... 39 0.002
At3g59140.1 68416.m06593 ABC transporter family protein putative... 38 0.002
At3g13080.2 68416.m01636 ABC transporter family protein almost i... 37 0.007
At3g13080.4 68416.m01638 ABC transporter family protein almost i... 34 0.040
At3g13080.3 68416.m01637 ABC transporter family protein almost i... 34 0.040
At1g71330.1 68414.m08233 ABC transporter family protein contains... 34 0.040
At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid t... 32 0.16
At4g32290.1 68417.m04594 expressed protein contains Pfam profile... 28 2.6
At3g31310.1 68416.m03983 hypothetical protein 28 2.6
At1g75260.1 68414.m08743 isoflavone reductase family protein sim... 28 2.6
At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase... 28 3.4
At4g30870.1 68417.m04383 repair endonuclease family protein cont... 27 4.5
At4g29360.1 68417.m04194 glycosyl hydrolase family 17 protein si... 27 6.0
At4g29360.2 68417.m04195 glycosyl hydrolase family 17 protein si... 27 7.9
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 27 7.9
>At4g28620.1 68417.m04092 ABC transporter family protein identical
to half-molecule ABC transporter ATM2 GI:9964119 from
[Arabidopsis thaliana]
Length = 680
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/67 (61%), Positives = 53/67 (79%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
+D VLF+DTIFHN+HYG+LS + E+VY A+R A +HD ++ +P Y T VGERGL LSGG
Sbjct: 520 QDTVLFNDTIFHNIHYGNLSATEEEVYNAARRAAIHDTIMKFPDKYSTAVGERGLMLSGG 579
Query: 434 EKQRVGI 454
EKQRV +
Sbjct: 580 EKQRVAL 586
Score = 67.7 bits (158), Expect = 3e-12
Identities = 31/82 (37%), Positives = 51/82 (62%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+I F +V+F Y+ + I + +SF +P ST++R+++RFF+ SGN+
Sbjct: 438 SISFENVHFSYLPERKILDGISFEVPAGKSVAIVGSSGSGKSTILRMIFRFFDVDSGNVK 497
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
I+GQ+I++V L SLR +I VVP
Sbjct: 498 IDGQDIKEVRLESLRSSIGVVP 519
>At4g28630.1 68417.m04093 ABC transporter family protein identical
to half-molecule ABC transporter ATM1 GI:9964117 from
[Arabidopsis thaliana]
Length = 678
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/67 (61%), Positives = 53/67 (79%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
+D VLF+DTIFHN+HYG+LS + E+VY A+R A +HD ++ +P Y T VGERGL LSGG
Sbjct: 518 QDTVLFNDTIFHNIHYGNLSATEEEVYDAARRAVIHDTIMKFPDKYSTAVGERGLMLSGG 577
Query: 434 EKQRVGI 454
EKQRV +
Sbjct: 578 EKQRVAL 584
Score = 68.1 bits (159), Expect = 3e-12
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+I F +V+F Y+ + I + +SF +P ST++R+++RFF+ SGN+
Sbjct: 436 SISFENVHFSYLPERKILDGISFEVPAGKSVAIVGSSGSGKSTILRMIFRFFDTDSGNVR 495
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
I+GQ+I++V L SLR I VVP
Sbjct: 496 IDGQDIKEVTLESLRSCIGVVP 517
>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
identical to half-molecule ABC transporter ATM3
GI:9964121 from [Arabidopsis thaliana]; almost identical
to mitochondrial half-ABC transporter STA1 GI:9187883
from [Arabidopsis thaliana]; identical to cDNA
mitochondrial half-ABC transporter (STA1 gene)GI:9187882
Length = 728
Score = 93.5 bits (222), Expect = 6e-20
Identities = 41/67 (61%), Positives = 52/67 (77%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
+D VLF+DTIFHN+HYG LS + E+VY A+R A +H+ + +P Y T VGERGLKLSGG
Sbjct: 560 QDTVLFNDTIFHNIHYGRLSATEEEVYEAARRAAIHETISNFPDKYSTIVGERGLKLSGG 619
Query: 434 EKQRVGI 454
EKQRV +
Sbjct: 620 EKQRVAL 626
Score = 69.7 bits (163), Expect = 9e-13
Identities = 34/81 (41%), Positives = 51/81 (62%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIFI 191
IEF +V+F Y+ + I + +SF +P ST++R+L+RFF+ SGNI I
Sbjct: 479 IEFENVHFSYLPERKILDGISFVVPAGKSVAIVGTSGSGKSTILRMLFRFFDTDSGNIRI 538
Query: 192 NGQNIRDVDLVSLRKAIAVVP 254
+GQ+I++V L SLR +I VVP
Sbjct: 539 DGQDIKEVRLDSLRSSIGVVP 559
>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1281
Score = 70.5 bits (165), Expect = 5e-13
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLS-KSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
S++ +LF++TI N+ YG + E++ AA++ A H+ + + P+GYDT VGERG++LS
Sbjct: 1075 SQEPILFNETIRSNIAYGKTGGATEEEIIAAAKAANAHNFISSLPQGYDTSVGERGVQLS 1134
Query: 428 GGEKQRVGI 454
GG+KQR+ I
Sbjct: 1135 GGQKQRIAI 1143
Score = 53.6 bits (123), Expect = 6e-08
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF TI N+ YG + +++ A LA + P+G DT VGE G ++SG
Sbjct: 437 SQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQMSG 496
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 497 GQKQRLAI 504
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP---IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGN 182
IE +DV F+Y +P IF S +P ST++ L+ RF++P+SG
Sbjct: 355 IELKDVYFRYP-ARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQ 413
Query: 183 IFINGQNIRDVDLVSLRKAIAVV 251
+ I+ +++ + L +R I +V
Sbjct: 414 VLIDNIDLKKLQLKWIRSKIGLV 436
Score = 42.3 bits (95), Expect = 1e-04
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IEFR V+F+Y IF +L +IP ST++ ++ RF+ P SG I
Sbjct: 993 IEFRHVSFRYPMRPDVQIFRDLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSGKI 1052
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+ I+ L LR+ + +V
Sbjct: 1053 LIDQVEIQTFKLSWLRQQMGLV 1074
>At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 69.7 bits (163), Expect = 9e-13
Identities = 30/69 (43%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLS-KSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
S++ VLF++TI N+ YG + + E++ A++ A +H+ + + P+GY+T VGERG++LS
Sbjct: 1087 SQEPVLFNETIGSNIAYGKIGGATEEEIITAAKAANVHNFISSLPQGYETSVGERGVQLS 1146
Query: 428 GGEKQRVGI 454
GG+KQR+ I
Sbjct: 1147 GGQKQRIAI 1155
Score = 56.4 bits (130), Expect = 9e-09
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ +LF TI N+ YG S +++ A +LA + + P+G +T VGE G +LSG
Sbjct: 439 SQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGTQLSG 498
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 499 GQKQRIAI 506
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP---IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGN 182
IE RDV F+Y +P IF S ++P ST++ L+ RF++P+SG
Sbjct: 357 IELRDVYFRYP-ARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGE 415
Query: 183 IFINGQNIRDVDLVSLRKAIAVV 251
+ I+G +++ + +R I +V
Sbjct: 416 VLIDGIDLKKFQVKWIRSKIGLV 438
>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]; contains Pfam profiles
PF00005: ABC transporter and PF00664: ABC transporter
transmembrane region; identical to cDNA MDR-like
p-glycoprotein (At3g28860) GI:24324261
Length = 1252
Score = 67.7 bits (158), Expect = 3e-12
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
+++ LF TI N+ YG + +V AA+ A H + PKGYDT+VGERG++LSG
Sbjct: 447 NQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLSG 506
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 507 GQKQRIAI 514
Score = 63.7 bits (148), Expect = 6e-11
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ LF TIF N+ YG + +V A+R A H + P+GY T VGERG++LSGG
Sbjct: 1093 QEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGG 1152
Query: 434 EKQRVGI 454
+KQR+ I
Sbjct: 1153 QKQRIAI 1159
Score = 50.0 bits (114), Expect = 7e-07
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IEF+DV F Y + IF N + P ST+V L+ RF++P SG I
Sbjct: 365 IEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQI 424
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
++G I+ + L LR+ I +V
Sbjct: 425 LLDGVEIKTLQLKFLREQIGLV 446
Score = 44.0 bits (99), Expect = 5e-05
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPI--FNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IEFR V+F Y + + F + + I S+++ ++ RF++P +G +
Sbjct: 1010 IEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKV 1069
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G++IR ++L SLR I +V
Sbjct: 1070 MIDGKDIRRLNLKSLRLKIGLV 1091
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 66.9 bits (156), Expect = 6e-12
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ LF TI+ N+ YG S +V A++LA H + + P+GY T+VGERG+++SGG
Sbjct: 1065 QEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGG 1124
Query: 434 EKQRVGI 454
++QR+ I
Sbjct: 1125 QRQRIAI 1131
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/68 (41%), Positives = 47/68 (69%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
+++ VLF TI N+ YG + E++ A++L+E + P+G++T+VGERG++LSG
Sbjct: 443 NQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLSG 502
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 503 GQKQRISI 510
Score = 51.2 bits (117), Expect = 3e-07
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
I F+DV F Y + IF+ L+F IP STM+ L+ RF+EP G +
Sbjct: 361 ILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAV 420
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
++G +IR +DL LR I +V
Sbjct: 421 MLDGNDIRYLDLKWLRGHIGLV 442
Score = 47.2 bits (107), Expect = 5e-06
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGN 182
TIE + V+F Y + IF++ + +P S+++ L+ RF++P +G
Sbjct: 981 TIELKGVHFSYPSRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGI 1040
Query: 183 IFINGQNIRDVDLVSLRKAIAVV 251
I I+GQ+I+ + L SLR+ I +V
Sbjct: 1041 IMIDGQDIKKLKLKSLRRHIGLV 1063
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 66.1 bits (154), Expect = 1e-11
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSK--SREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
++ VLF+DTI N+ YG + + ++ AAS LA H + + KGYDT VGERG++LS
Sbjct: 1068 QEPVLFNDTIRANIAYGKGGEEATEAEIIAASELANAHRFISSIQKGYDTVVGERGIQLS 1127
Query: 428 GGEKQRVGI 454
GG+KQRV I
Sbjct: 1128 GGQKQRVAI 1136
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF +I N+ YG + E++ AAS+LA + P G +T VGE G +LSG
Sbjct: 435 SQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGLETLVGEHGTQLSG 494
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 495 GQKQRIAI 502
>At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1233
Score = 65.7 bits (153), Expect = 1e-11
Identities = 27/67 (40%), Positives = 46/67 (68%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ LF TI+ N+ YG+ S+ +V ++ LA H + + P+GY T+VGERG+++SGG
Sbjct: 1073 QEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGG 1132
Query: 434 EKQRVGI 454
++QR+ I
Sbjct: 1133 QRQRIAI 1139
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/68 (39%), Positives = 46/68 (67%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
+++ LF TI N+ YG + E++ A++L+E + P+G++T+VGERG++LSG
Sbjct: 443 NQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLSG 502
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 503 GQKQRIAI 510
Score = 51.2 bits (117), Expect = 3e-07
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
I+F+D F Y + IF+ L+ +IP ST++ L+ RF+EP SG +
Sbjct: 361 IQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAV 420
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
++G NI ++D+ LR I +V
Sbjct: 421 LLDGNNISELDIKWLRGQIGLV 442
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGN 182
TIE + V+F Y + IF + + S+++ L+ RF++P +G
Sbjct: 989 TIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGK 1048
Query: 183 IFINGQNIRDVDLVSLRKAIAVV 251
+ I G++I+ +DL +LRK I +V
Sbjct: 1049 VMIEGKDIKKLDLKALRKHIGLV 1071
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 64.9 bits (151), Expect = 2e-11
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSK---SREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
++ VLF+DTI N+ YG S+ + ++ AA+ LA H + + +GYDT VGERG++L
Sbjct: 1115 QEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVGERGIQL 1174
Query: 425 SGGEKQRVGI 454
SGG+KQRV I
Sbjct: 1175 SGGQKQRVAI 1184
Score = 59.7 bits (138), Expect = 9e-10
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF +I N+ YG + + E++ AA+ LA + P+G DT VGE G +LSG
Sbjct: 463 SQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSG 522
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 523 GQKQRIAI 530
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVN--GKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IE +DV+F Y + IF+ S IP ST++ L+ RF++P+SG +
Sbjct: 381 IELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAV 440
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G N+++ L +R I +V
Sbjct: 441 LIDGVNLKEFQLKWIRSKIGLV 462
>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1229
Score = 64.5 bits (150), Expect = 3e-11
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSK--SREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
++ VLF+DTI N+ YG S ++ AA+ LA H + + +GYDT VGERG++LS
Sbjct: 1067 QEPVLFNDTIRSNIAYGKGGDEASEAEIIAAAELANAHGFISSIQQGYDTVVGERGIQLS 1126
Query: 428 GGEKQRVGI 454
GG+KQRV I
Sbjct: 1127 GGQKQRVAI 1135
Score = 60.1 bits (139), Expect = 7e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF +I N+ YG + + E++ AA++LA + + P+G +T VGE G +LSG
Sbjct: 430 SQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGEHGTQLSG 489
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 490 GQKQRIAI 497
>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1273
Score = 63.7 bits (148), Expect = 6e-11
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSK---SREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
++ VLF+DTI N+ YG S+ + ++ AA+ LA H + + +GYDT VGE+G++L
Sbjct: 1110 QEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVGEKGIQL 1169
Query: 425 SGGEKQRVGI 454
SGG+KQRV I
Sbjct: 1170 SGGQKQRVAI 1179
Score = 57.6 bits (133), Expect = 4e-09
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ VLF +I N+ YG + + +++ A+ LA + P+G DT+VGE G +LSGG
Sbjct: 451 QEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLPQGLDTKVGEHGTQLSGG 510
Query: 434 EKQRVGI 454
+KQR+ I
Sbjct: 511 QKQRIAI 517
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 63.3 bits (147), Expect = 7e-11
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
E C LF TI+ N+ YG + ++ A+ LA H + P+GY T VGERG++LSGG
Sbjct: 1108 EPC-LFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGERGVQLSGG 1166
Query: 434 EKQRVGI 454
+KQR+ I
Sbjct: 1167 QKQRIAI 1173
Score = 62.1 bits (144), Expect = 2e-10
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ LF +I N+ G + ++ A+R+A H ++ P G+DT+VGERGL+LSG
Sbjct: 450 SQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSG 509
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 510 GQKQRIAI 517
Score = 50.8 bits (116), Expect = 4e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 TATIEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQS 176
T +E ++V+F Y + I NN S+P ST+V L+ RF++P S
Sbjct: 365 TGLVELKNVDFSYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNS 424
Query: 177 GNIFINGQNIRDVDLVSLRKAIAVV 251
G + ++GQ+++ + L LR+ I +V
Sbjct: 425 GQVLLDGQDLKTLKLRWLRQQIGLV 449
Score = 50.8 bits (116), Expect = 4e-07
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPI--FNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
+E + ++F Y + I F +LS S+++ L+ RF+EP SG +
Sbjct: 1024 VELKHIDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRV 1083
Query: 186 FINGQNIRDVDLVSLRKAIAVVP 254
I+G++IR +L ++RK IA+VP
Sbjct: 1084 MIDGKDIRKYNLKAIRKHIAIVP 1106
>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein atpgp1
GI:3849833 from [Arabidopsis thaliana]
Length = 1245
Score = 62.5 bits (145), Expect = 1e-10
Identities = 25/67 (37%), Positives = 44/67 (65%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ LF TI+ N+ YG+ + S ++ A++ A H+ ++ +GY T G++G++LSGG
Sbjct: 1087 QEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGG 1146
Query: 434 EKQRVGI 454
+KQRV I
Sbjct: 1147 QKQRVAI 1153
Score = 56.4 bits (130), Expect = 9e-09
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPI--FNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IEFR+V+F Y I F NL+ + ST++ L+ RF++P +GN+
Sbjct: 1004 IEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNL 1063
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+GQ+I+ ++L SLRK +A+V
Sbjct: 1064 CIDGQDIKTLNLRSLRKKLALV 1085
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ LF TI N+ G + + +Q+ A++ A + + P GY+T+VGE G +LSG
Sbjct: 453 SQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSG 512
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 513 GQKQRIAI 520
Score = 50.0 bits (114), Expect = 7e-07
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNG-KPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
IEF+ V+F Y + +F NLSF+I ST++ ++ RF+EP SG I
Sbjct: 372 IEFQKVSFAYPSRPNMVFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEIL 431
Query: 189 INGQNIRDVDLVSLRKAIAVV 251
++G +I+ + L R+ + +V
Sbjct: 432 LDGNDIKSLKLKWFREQLGLV 452
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 62.1 bits (144), Expect = 2e-10
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSRE-QVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
S++ VLF++TI N+ YG + E ++ +A+ L+ H + +GYDT VGERG++LS
Sbjct: 1130 SQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDTMVGERGVQLS 1189
Query: 428 GGEKQRVGI 454
GG+KQRV I
Sbjct: 1190 GGQKQRVAI 1198
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF +I N+ YG + + E++ A+ LA + P+G DT VGE G +LSG
Sbjct: 485 SQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVGEHGTQLSG 544
Query: 431 GEKQRVGI 454
G+KQR+ +
Sbjct: 545 GQKQRIAV 552
Score = 47.6 bits (108), Expect = 4e-06
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNG--KPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IE +VNF Y + IF S SI ST+V L+ RF++PQSG +
Sbjct: 403 IELNNVNFSYPARPEEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEV 462
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G N+++ L +R I +V
Sbjct: 463 RIDGINLKEFQLKWIRSKIGLV 484
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 62.1 bits (144), Expect = 2e-10
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ LF TI N+ +G S + V A++ + H+ + P GY+T+VGERG+++SG
Sbjct: 441 SQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGVQMSG 500
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 501 GQKQRIAI 508
Score = 58.8 bits (136), Expect = 2e-09
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQ--VYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
S++ LF TI N+ YG +S ++ + A++ A HD + + +GYDT G+RG++L
Sbjct: 1077 SQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQL 1136
Query: 425 SGGEKQRVGI 454
SGG+KQR+ I
Sbjct: 1137 SGGQKQRIAI 1146
Score = 50.4 bits (115), Expect = 6e-07
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 TATIEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQS 176
T +EF DV+F Y IF N S I ST++ L+ RF++P
Sbjct: 992 TGQVEFLDVDFSYPTRPDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLK 1051
Query: 177 GNIFINGQNIRDVDLVSLRKAIAVV 251
G + I+G++IR L SLR+ IA+V
Sbjct: 1052 GIVKIDGRDIRSYHLRSLRRHIALV 1076
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 61.7 bits (143), Expect = 2e-10
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKS--REQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
S++ +LF TI N+ YG S ++ A++ A HD ++T GYDT G+RG++L
Sbjct: 1058 SQEPILFAGTIRENIMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGVQL 1117
Query: 425 SGGEKQRVGI 454
SGG+KQR+ I
Sbjct: 1118 SGGQKQRIAI 1127
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/68 (39%), Positives = 45/68 (66%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ LF +I N+ +G S ++V A++ + HD + +P GY T+VGERG+++SG
Sbjct: 420 SQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGERGVQMSG 479
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 480 GQKQRISI 487
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGK--PIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
++F+ V F Y + PIF++L IP ST++ LL RF++P G I
Sbjct: 338 VQFKHVKFMYSSRPETPIFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEI 397
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G +I+ + + LR + +V
Sbjct: 398 LIDGVSIKKLQVKWLRSQMGLV 419
Score = 42.7 bits (96), Expect = 1e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
I+F +V+F Y IF N S I ST++ L+ RF++P G +
Sbjct: 976 IKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIV 1035
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G++IR L SLR+ I +V
Sbjct: 1036 KIDGRDIRSYHLRSLRQHIGLV 1057
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF +I N+ +G S ++V A++ + H + +P Y T+VGERG++LSG
Sbjct: 429 SQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQLSG 488
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 489 GQKQRIAI 496
Score = 58.0 bits (134), Expect = 3e-09
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKS--REQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
S++ LF TI N+ YG S ++ A++ A HD + + GYDT G+RG++L
Sbjct: 1062 SQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQL 1121
Query: 425 SGGEKQRVGI 454
SGG+KQR+ I
Sbjct: 1122 SGGQKQRIAI 1131
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
I F +V+F Y IF N S I ST++ L+ RF++P G +
Sbjct: 980 ISFSNVDFAYPTRPDVIIFQNFSIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIV 1039
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G++IR L SLR+ IA+V
Sbjct: 1040 KIDGRDIRSCHLRSLRQHIALV 1061
Score = 44.0 bits (99), Expect = 5e-05
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGK--PIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
+EF V F Y + PIF++L +P ST++ LL RF++P +G I
Sbjct: 347 VEFNHVKFTYPSRPETPIFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEI 406
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G I + + LR + +V
Sbjct: 407 LIDGLPINKLQVKWLRSQMGLV 428
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/68 (39%), Positives = 45/68 (66%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF +I N+ +G S ++V A++ + H + +P GY T+VGERG+++SG
Sbjct: 441 SQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKTQVGERGVQMSG 500
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 501 GQKQRIAI 508
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKS--REQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
S++ +LF TI N+ YG S ++ A++ A HD + + GYDT G++G++L
Sbjct: 1077 SQEPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDTNCGDKGVQL 1136
Query: 425 SGGEKQRVGI 454
SGG+KQR+ I
Sbjct: 1137 SGGQKQRIAI 1146
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP--IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
I F +V+F Y IF N S I ST++ L+ RF++P G +
Sbjct: 995 ITFLNVDFAYPTRPDVVIFENFSIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTV 1054
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G++IR L SLRK I++V
Sbjct: 1055 KIDGRDIRSYHLRSLRKYISLV 1076
>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
[Coptis japonica] GI:14715462, MDR-like p-glycoprotein
[Arabidopsis thaliana] GI:24324262; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1286
Score = 60.9 bits (141), Expect = 4e-10
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSRE-QVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
S++ +LF++TI N+ YG + E ++ +++ L+ H + +GYDT VGERG++LS
Sbjct: 1124 SQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVGERGIQLS 1183
Query: 428 GGEKQRVGI 454
GG+KQRV I
Sbjct: 1184 GGQKQRVAI 1192
Score = 57.6 bits (133), Expect = 4e-09
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ VLF +I N+ YG + E++ AA+ LA V P+G DT VGE G +LSG
Sbjct: 466 SQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQLSG 525
Query: 431 GEKQRVGI 454
G+KQR+ +
Sbjct: 526 GQKQRIAV 533
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVN--GKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IE +DV F Y + IF S I ST+V L+ RF++PQ+G++
Sbjct: 384 IELKDVYFTYPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDV 443
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G N+++ L +R I +V
Sbjct: 444 LIDGINLKEFQLKWIRSKIGLV 465
>At4g25450.1 68417.m03665 ABC transporter family protein similar to
multidrug resistance protein 2 SP:P21440 from [Mus
musculus]
Length = 714
Score = 60.1 bits (139), Expect = 7e-10
Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSK--SREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
+++ VLF ++ N+ YG ++ S++ + A++ A HD +++ P+GYDT VGERG L
Sbjct: 552 NQEPVLFSLSVAENIAYGLPNEHVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLL 611
Query: 425 SGGEKQRVGI 454
SGG++QRV I
Sbjct: 612 SGGQRQRVAI 621
>At5g39040.1 68418.m04724 ABC transporter (TAP2) TAP-like ABC
transporter, Rattus norvegicus, EMBL:AB027520; identical
to cDNA transporter associated with antigen
processing-like protein (TAP2); GI:19335723
Length = 644
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYG-DLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLS 427
S++ +LF+ ++ N+ YG D S + A+++A H+ + +P Y+T VGERGL+LS
Sbjct: 478 SQEPILFNCSVEENIAYGFDGEASFTDIENAAKMANAHEFIEAFPDKYNTVVGERGLRLS 537
Query: 428 GGEKQRVGI 454
GG+KQR+ I
Sbjct: 538 GGQKQRIAI 546
Score = 35.5 bits (78), Expect = 0.017
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVN--GKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
+E DV F Y + I +S + +T+ L+ RF++P G I
Sbjct: 396 VELNDVWFAYPSRPSHMILKGISLRLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGKI 455
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
+NG ++ ++ L K I++V
Sbjct: 456 LLNGVSLMEISHQYLHKQISIV 477
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/68 (38%), Positives = 44/68 (64%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ LF +I N+ +G S ++V A++ + H+ + +P GY T+VGERG+ +SG
Sbjct: 358 SQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGVHMSG 417
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 418 GQKQRIAI 425
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKS--REQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
S++ LF TI N+ YG S ++ A + A H+ + + GYDT G+RG++L
Sbjct: 993 SQEPTLFAGTIRENIMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDTYCGDRGVQL 1052
Query: 425 SGGEKQRVGI 454
SGG+KQR+ I
Sbjct: 1053 SGGQKQRIAI 1062
Score = 44.0 bits (99), Expect = 5e-05
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVN--GKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
I F +V+F Y IFNN S I ST++ L+ RF++P G +
Sbjct: 911 ITFLNVDFAYPTRPNMVIFNNFSIEIHEGKSTAIVGPSRSGKSTVIGLIERFYDPLQGIV 970
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G++IR L SLR+ +++V
Sbjct: 971 KIDGRDIRSYHLRSLRQHMSLV 992
>At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]
Length = 1247
Score = 58.4 bits (135), Expect = 2e-09
Identities = 25/67 (37%), Positives = 43/67 (64%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ LF +I N+ YG+ + S ++ A++ A H+ + +GY T VG++G++LSGG
Sbjct: 1089 QEPALFSTSIHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGG 1148
Query: 434 EKQRVGI 454
+KQRV I
Sbjct: 1149 QKQRVAI 1155
Score = 56.4 bits (130), Expect = 9e-09
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKPI--FNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IEFR+V+F Y I F NL+ + ST++ L+ RF++P +GN+
Sbjct: 1006 IEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNL 1065
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
I+G +I+ V+L SLRK +A+V
Sbjct: 1066 CIDGHDIKSVNLRSLRKKLALV 1087
Score = 55.6 bits (128), Expect = 1e-08
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
S++ LF TI N+ G + +Q+ A++ A + + P GY+T+VGE G +LSG
Sbjct: 454 SQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSG 513
Query: 431 GEKQRVGI 454
G+KQR+ I
Sbjct: 514 GQKQRIAI 521
Score = 50.4 bits (115), Expect = 6e-07
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNG-KPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
IEF V+F Y + +F NLSF+I ST++ ++ RF+EP+SG I
Sbjct: 373 IEFCGVSFAYPSRPNMVFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEIL 432
Query: 189 INGQNIRDVDLVSLRKAIAVV 251
++G +I+++ L LR+ + +V
Sbjct: 433 LDGNDIKNLKLKWLREQMGLV 453
>At3g55320.1 68416.m06144 ABC transporter family protein similar to
multidrug resistant P-glycoprotein pmdr1 GI:4204793 from
[Solanum tuberosum]
Length = 1408
Score = 56.0 bits (129), Expect = 1e-08
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ ++F TI N+ Y + S ++ A+R+A H + + P GYDT +G RG++L+ G
Sbjct: 1242 QEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTPG 1301
Query: 434 EKQRVGI 454
+KQR+ I
Sbjct: 1302 QKQRIAI 1308
Score = 47.6 bits (108), Expect = 4e-06
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGK--PIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IEFR+V F Y++ PI + ++P S+++ L+ RF++P G +
Sbjct: 414 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 473
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
++G+NI+++ L LR I +V
Sbjct: 474 LLDGENIKNLKLEWLRSQIGLV 495
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
+++ L +I N+ YG + +Q+ A++ A H + + KGY+T+VG GL ++
Sbjct: 496 TQEPALLSLSIRENIAYGR-DATLDQIEEAAKNAHAHTFISSLEKGYETQVGRAGLAMTE 554
Query: 431 GEKQRVGI 454
+K ++ I
Sbjct: 555 EQKIKLSI 562
>At2g39480.1 68415.m04845 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1407
Score = 56.0 bits (129), Expect = 1e-08
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +2
Query: 254 EDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGG 433
++ ++F TI N+ Y + S ++ A+R+A H + + P GYDT +G RG++L+ G
Sbjct: 1241 QEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTQG 1300
Query: 434 EKQRVGI 454
+KQR+ I
Sbjct: 1301 QKQRIAI 1307
Score = 47.6 bits (108), Expect = 4e-06
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 IEFRDVNFKYVNGK--PIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
IEFR+V F Y++ PI + ++P S+++ L+ RF++P G +
Sbjct: 412 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 471
Query: 186 FINGQNIRDVDLVSLRKAIAVV 251
++G+NI+++ L LR I +V
Sbjct: 472 LLDGENIKNLKLEWLRSQIGLV 493
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSG 430
+++ L +I N+ YG + +Q+ A++ A H + + KGY+T+VG+ GL L+
Sbjct: 494 TQEPALLSLSIRENIAYGR-DATLDQIEEAAKKAHAHTFISSLEKGYETQVGKTGLTLTE 552
Query: 431 GEKQRVGI 454
+K ++ I
Sbjct: 553 EQKIKLSI 560
>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
transport protein sll1276, Synechocystis sp., PIR:S77239
Length = 634
Score = 55.2 bits (127), Expect = 2e-08
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 SEDCVLFHDTIFHNLHYGDLSKS--REQVYAASRLAELHDAVLTWPKGYDTEVGERGLKL 424
S+D LF TI N+ Y DL+ ++V A++ A + + P+GY+T VG RG L
Sbjct: 477 SQDTTLFSGTIADNIGYRDLTTGIDMKRVELAAKTANADEFIRNLPEGYNTGVGPRGSSL 536
Query: 425 SGGEKQRVGI 454
SGG+KQR+ I
Sbjct: 537 SGGQKQRLAI 546
Score = 52.4 bits (120), Expect = 1e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 12 IEFRDVNFKY-VNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+E D++FKY N P+ + L+ I +T+++LL R +EP SG+I
Sbjct: 396 VELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYEPSSGSII 455
Query: 189 INGQNIRDVDLVSLRKAIAVV 251
I+ +I+D+ L SLRK + +V
Sbjct: 456 IDKIDIKDIKLESLRKHVGLV 476
>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
profile: PF00005 ABC transporters; similar to TAP1
protein (transporter of processed antigen) GB:AAD53033
(Oncorhynchus mykiss); identical to cDNA transporter
associated with antigen processing-like protein (TAP1)
GI:19335721
Length = 700
Score = 46.8 bits (106), Expect = 7e-06
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 266 LFHDTIFHNLHYG-DLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQ 442
LF I N+ YG D + S+E + +A++ A HD + P GY+T V + LSGG+KQ
Sbjct: 542 LFRTDISSNIKYGCDRNISQEDIISAAKQAYAHDFITALPNGYNTIVDDD--LLSGGQKQ 599
Query: 443 RVGI 454
R+ I
Sbjct: 600 RIAI 603
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 TATIEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSG 179
T TIE DV +Y P + + +S P ST+++ L+R EP +G
Sbjct: 1265 TGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAG 1324
Query: 180 NIFINGQNIRDVDLVSLRKAIAVVP 254
I I+ +I + L LR + ++P
Sbjct: 1325 KITIDNIDISQIGLHDLRSRLGIIP 1349
Score = 33.5 bits (73), Expect = 0.069
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 386 GYDTEVGERGLKLSGGEKQRV 448
G T +GERG+ LSGG+KQRV
Sbjct: 735 GDQTIIGERGINLSGGQKQRV 755
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 44.4 bits (100), Expect = 4e-05
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
+I FRD+ +Y P + N++ + P ST+++ L+R EP G I
Sbjct: 785 SIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTI 844
Query: 186 FINGQNIRDVDLVSLRKAIAVVP 254
I+ +I + L LR + ++P
Sbjct: 845 VIDNVDITKIGLHDLRSRLGIIP 867
Score = 40.7 bits (91), Expect = 5e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 278 TIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRVGI 454
TI N+ +G + +S + A + D L + G TE+GERG+ +SGG+KQR+ I
Sbjct: 292 TIRDNILFGSIYESEKYERTVKACALIKDFEL-FSNGDLTEIGERGINMSGGQKQRIQI 349
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 44.4 bits (100), Expect = 4e-05
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
+I FRD+ +Y P + N++ P ST+++ L+R EP G I
Sbjct: 1238 SIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTI 1297
Query: 186 FINGQNIRDVDLVSLRKAIAVVP 254
I+ +I + L LR + ++P
Sbjct: 1298 VIDNVDITKIGLHDLRSRLGIIP 1320
Score = 40.7 bits (91), Expect = 5e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 278 TIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRVGI 454
TI N+ +G + +S + A + D L + G TE+GERG+ +SGG+KQR+ I
Sbjct: 708 TIRDNILFGSMYESEKYERTVKACALIKDFEL-FSNGDLTEIGERGINMSGGQKQRIQI 765
>At2g07680.1 68415.m00992 ABC transporter family protein
Length = 1194
Score = 43.2 bits (97), Expect = 9e-05
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNG-KPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+EF +V +Y++ P +SF+I S+++ L+R SG I
Sbjct: 958 VEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEIL 1017
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
++G+NI + + LR +AVVP
Sbjct: 1018 VDGKNISHLPIRELRSCLAVVP 1039
>At3g13080.1 68416.m01635 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1514
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+E RD+ +Y P + ++ + ST+++ L+R EP +G I
Sbjct: 1269 VEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIR 1328
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
I+G NI + L LR ++++P
Sbjct: 1329 IDGVNILTIGLHDLRLRLSIIP 1350
Score = 34.3 bits (75), Expect = 0.040
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 386 GYDTEVGERGLKLSGGEKQRVGI 454
G T +GERG+ LSGG+KQR+ I
Sbjct: 753 GDQTVIGERGINLSGGQKQRIQI 775
>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
(MRP2) almost identical to MgATP-energized glutathione
S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
Length = 1623
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 266 LFHDTIFHNLHYGDLSKSREQVYAASRLAEL-HDAVLTWPKGYDTEVGERGLKLSGGEKQ 442
+F+ T+ N+ +G RE+ A + L HD L P G TE+GERG+ +SGG+KQ
Sbjct: 689 IFNATVRDNILFGS-PFDREKYERAIDVTSLKHDLELL-PGGDLTEIGERGVNISGGQKQ 746
Query: 443 RVGI 454
RV +
Sbjct: 747 RVSM 750
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 TATIEFRDVNFKY-VNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSG 179
+ +I+F DV +Y P+ + +SF I S+++ L+R E + G
Sbjct: 1239 SGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKG 1298
Query: 180 NIFINGQNIRDVDLVSLRKAIAVVP 254
I I+ ++ L+ LRK + ++P
Sbjct: 1299 RILIDDCDVGKFGLMDLRKVLGIIP 1323
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC
transporter, PF00664: ABC transporter transmembrane
region
Length = 1488
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +2
Query: 266 LFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQR 445
+F+ T+ N+ +G +S A A HD L +P TE+GERG+ +SGG+KQR
Sbjct: 690 IFNATLRENILFGSDFESERYWRAIDVTALQHDLDL-FPGRDRTEIGERGVNISGGQKQR 748
Query: 446 VGI 454
V +
Sbjct: 749 VSM 751
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1495
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 266 LFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYD-TEVGERGLKLSGGEKQ 442
+F+ T+ N+ +G +S A A HD L G D TE+GERG+ +SGG+KQ
Sbjct: 690 IFNATVRENILFGSDFESERYWRAIDATALQHDLDLL--PGRDLTEIGERGVNISGGQKQ 747
Query: 443 RVGI 454
RV +
Sbjct: 748 RVSM 751
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 TIEFRDVNFKYVNG-KPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
+I+F DV+ +Y G P+ + L+F + S+M+ L+R E + G I
Sbjct: 1234 SIKFEDVHLRYRPGLPPVLHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKGRI 1293
Query: 186 FINGQNIRDVDLVSLRKAIAVVP 254
I+ ++ L +R+ ++++P
Sbjct: 1294 MIDDCDVAKFGLTDVRRVLSIIP 1316
>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
(MRP1) identical to glutathione S-conjugate transporting
ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
Length = 1622
Score = 40.3 bits (90), Expect = 6e-04
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +2
Query: 266 LFHDTIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQR 445
+F+ T+ N+ +G + A HD L P G TE+GERG+ +SGG+KQR
Sbjct: 689 IFNATVRDNILFGAPFDQEKYERVIDVTALQHDLELL-PGGDLTEIGERGVNISGGQKQR 747
Query: 446 VGI 454
V +
Sbjct: 748 VSM 750
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 TATIEFRDVNFKY-VNGKPIFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSG 179
+ +I+F DV +Y P+ + +SF I S+++ L+R E + G
Sbjct: 1234 SGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKG 1293
Query: 180 NIFINGQNIRDVDLVSLRKAIAVVP 254
I I+ +I L+ LRK + ++P
Sbjct: 1294 RILIDECDIGRFGLMDLRKVLGIIP 1318
>At3g62700.1 68416.m07043 glutathione-conjugate transporter, putative
similar to glutathione-conjugate transporter AtMRP4
GI:2959767 from [Arabidopsis thaliana]
Length = 1539
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
I DV +Y P + L+ I ST++++L+R EP G I
Sbjct: 1297 IRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKII 1356
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
I+G +I + L LR ++P
Sbjct: 1357 IDGIDICTLGLHDLRSRFGIIP 1378
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 278 TIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRV 448
T+ N+ +G L +R + ++ L + G TE+GERG+ LSGG+KQR+
Sbjct: 717 TVQDNILFG-LPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRI 772
>At3g21250.1 68416.m02685 ABC transporter family protein similar to
MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
thaliana]
Length = 1294
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 278 TIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRV 448
TI N+ YG +SR + AA + L + + G TE+G+RG+ LSGG+KQR+
Sbjct: 517 TIRDNILYGKPMESR-RYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRI 572
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 TIEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNI 185
TI +++ +Y P + +S + ST++ L+R EP SG I
Sbjct: 1044 TIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCI 1103
Query: 186 FINGQNIRDVDLVSLRKAIAVVP 254
I+G +I + L LR ++++P
Sbjct: 1104 LIDGIDISKIGLKDLRMKLSIIP 1126
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 132 STMVRLLYRFFEPQSGNIFINGQNIRDVDLVSLRKAIAVVP 254
ST+++ L+R EP +G I I+G NI + L LR ++++P
Sbjct: 1260 STLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIP 1300
Score = 33.1 bits (72), Expect = 0.092
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 395 TEVGERGLKLSGGEKQRVGI 454
T +GERG+ LSGG+KQR+ I
Sbjct: 717 TVIGERGINLSGGQKQRIQI 736
>At3g13100.1 68416.m01640 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1493
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 132 STMVRLLYRFFEPQSGNIFINGQNIRDVDLVSLRKAIAVVP 254
ST+++ L+R EP +G I I+G NI + L LR ++++P
Sbjct: 1282 STLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIP 1322
Score = 33.9 bits (74), Expect = 0.052
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 320 REQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRVGI 454
RE L+ + +P T +GERG+ LSGG+KQR+ I
Sbjct: 715 REWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQI 759
>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
identical to AtMRP4 GI:2959767 from [Arabidopsis
thaliana]
Length = 1516
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 278 TIFHNLHYGDLSKSREQVYAASRLAELHDAVLTWPKGYDTEVGERGLKLSGGEKQRV 448
T+ N+ +G L RE+ + L + G TE+GERG+ LSGG+KQR+
Sbjct: 719 TVQDNILFG-LPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRI 774
Score = 37.9 bits (84), Expect = 0.003
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+ D+ +Y P + ++ I ST++++L+R EP G I
Sbjct: 1274 VHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKII 1333
Query: 189 INGQNIRDVDLVSLRKAIAVVP 254
I+G +I + L LR ++P
Sbjct: 1334 IDGIDISTLGLHDLRSRFGIIP 1355
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 38.3 bits (85), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 380 PKGYDTEVGERGLKLSGGEKQRV 448
P G TE+GERG+ LSGG+KQR+
Sbjct: 713 PDGDQTEIGERGVNLSGGQKQRI 735
Score = 36.7 bits (81), Expect = 0.007
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 TATIEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSG 179
T +E D+ +Y P + +S + +T++ L+R EP G
Sbjct: 1204 TGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGG 1263
Query: 180 NIFINGQNIRDVDLVSLRKAIAVVP 254
I ++G +I + + LR ++P
Sbjct: 1264 KIVVDGVDISKIGVHDLRSRFGIIP 1288
>At3g13080.2 68416.m01636 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1489
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 12 IEFRDVNFKYVNGKP-IFNNLSFSIPXXXXXXXXXXXXXXXSTMVRLLYRFFEPQSGNIF 188
+E RD+ +Y P + ++ + ST+++ L+R EP +G I
Sbjct: 1269 VEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIR 1328
Query: 189 INGQNIRDVDLVSLR 233
I+G NI + L LR
Sbjct: 1329 IDGVNILTIGLHDLR 1343
Score = 34.3 bits (75), Expect = 0.040
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 386 GYDTEVGERGLKLSGGEKQRVGI 454
G T +GERG+ LSGG+KQR+ I
Sbjct: 753 GDQTVIGERGINLSGGQKQRIQI 775
>At3g13080.4 68416.m01638 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 34.3 bits (75), Expect = 0.040
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 386 GYDTEVGERGLKLSGGEKQRVGI 454
G T +GERG+ LSGG+KQR+ I
Sbjct: 753 GDQTVIGERGINLSGGQKQRIQI 775
>At3g13080.3 68416.m01637 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 34.3 bits (75), Expect = 0.040
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 386 GYDTEVGERGLKLSGGEKQRVGI 454
G T +GERG+ LSGG+KQR+ I
Sbjct: 753 GDQTVIGERGINLSGGQKQRIQI 775
>At1g71330.1 68414.m08233 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 324
Score = 34.3 bits (75), Expect = 0.040
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 386 GYDTEVGERGLKLSGGEKQRVGI 454
G T +GERG+ LSGG+KQR+ I
Sbjct: 25 GDQTVIGERGINLSGGQKQRIHI 47
>At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related weak hit to Pfam PF00234:
Protease inhibitor/seed storage/LTP family
Length = 219
Score = 32.3 bits (70), Expect = 0.16
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 166 SKNRYNSRTIVDFPEPEPPTMPILAPAGIEKLRLLNIGFPFTYLKFTSLNSIVA 5
S + ++ T P P PP +P+L + L++ N FP T + T SI+A
Sbjct: 165 SSDLFSPETATLAPPPPPPPLPVLQYFSSDSLKIRNFWFPSTII-MTFATSILA 217
>At4g32290.1 68417.m04594 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 384
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 250 TTAMAFLKLTRSTSRMFCPLMNMFPDCGSKNRYNSRTIVD-FPEPEPP 110
T +AF+ LT S F PL MF D SKN YN D E +PP
Sbjct: 91 TRKIAFMYLTTSPLP-FAPLWEMFFDGISKNLYNVYVHADPTREYDPP 137
>At3g31310.1 68416.m03983 hypothetical protein
Length = 291
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 238 PSQSFRGLRAVPRHDIPQPALRR 306
PS++FRG++ RH+ P P + R
Sbjct: 3 PSRTFRGMKVTRRHEEPTPFVAR 25
>At1g75260.1 68414.m08743 isoflavone reductase family protein
similar to SP|P52577 Isoflavone reductase homolog P3 (EC
1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile
PF02716: Isoflavone reductase
Length = 593
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 181 FPDCGSKNRYNSRTIVDFPEPEPPTMPILAPAGI 80
F S +R +S T P P PP+ P PAGI
Sbjct: 10 FFSSNSPSRISSGTSSPSPPPTPPSRPPFRPAGI 43
>At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase
large subunit 3 (APL3) / ADP-glucose pyrophosphorylase
identical to SP|P55231
Length = 521
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 245 SRSEDCVLFHDTIFHNLHYGDLSKSREQVYAASRL---AELHDAVLTWPKGYDTE 400
+++E C + + I H G+ S R + SRL EL D ++ Y TE
Sbjct: 391 TKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTE 445
>At4g30870.1 68417.m04383 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to repair
endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
Length = 661
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -1
Query: 311 SGLRSAGCGISCRGTARSPRNDC---DGLPQANQVHVPDVLSVDEYVPGLRFEESVQQSD 141
+GL A G R N+C GLP + D+LSVDE P + +++ Q+
Sbjct: 144 NGLSHAPVGYMLTVEGREVANECILRSGLPDS-----VDILSVDEMDPTPQAKKTPNQNP 198
Query: 140 HCGFS 126
C F+
Sbjct: 199 TCSFT 203
>At4g29360.1 68417.m04194 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 534
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -1
Query: 266 ARSPRN-DCDGLPQANQVHVPD-VLSVDEYVPGLRFEESVQQSDHCGFSGARAAHDADLG 93
A P N DC + PD VLS Y +++S S C F+GA D D
Sbjct: 410 ACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPS 469
Query: 92 AG 87
G
Sbjct: 470 YG 471
>At4g29360.2 68417.m04195 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 488
Score = 26.6 bits (56), Expect = 7.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -1
Query: 266 ARSPRN-DCDGLPQANQVHVPD-VLSVDEYVPGLRFEESVQQSDHCGFSGARAAHDAD 99
A P N DC + PD VLS Y +++S S C F+GA D D
Sbjct: 410 ACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKD 467
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -1
Query: 254 RNDCDGLPQANQVHVPDVLSVDEYVPGLRFEESVQQSDHCGFSGARAAHDADLGA 90
R+ CD + + +H P + + + G+ F S+ C R D+D GA
Sbjct: 255 RSICDFVAHIDCIHNPQTIRISRHFHGVSFTSSLPSGKWC-CGICRREIDSDYGA 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,577,745
Number of Sequences: 28952
Number of extensions: 168152
Number of successful extensions: 740
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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