Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1346
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.43 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 292  WYHLVVSQHNARSMASLVRSFGTLSFPGNS 203
            WYHL V+ HN          F TL+  G +
Sbjct: 1559 WYHLRVTAHNNAGFNVAEYEFATLTVTGGT 1588


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 402 NFTLLHCRHTNFPCFYYTIFAQT 334
           NF +LHC +T + C Y  I   T
Sbjct: 151 NF-MLHCNNTTWRCLYRWIVLYT 172


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 164 LPDPQSLFYFSNQTFFKNS*KCDFNLLMLLCY 69
           +P   SLF  S   FFK+S K  F+  +++ +
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFF 172


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 164 LPDPQSLFYFSNQTFFKNS*KCDFNLLMLLCY 69
           +P   SLF  S   FFK+S K  F+  +++ +
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFF 172


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 164 LPDPQSLFYFSNQTFFKNS*KCDFNLLMLLCY 69
           +P   SLF  S   FFK+S K  F+  +++ +
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFF 172


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 164 LPDPQSLFYFSNQTFFKNS*KCDFNLLMLLCY 69
           +P   SLF  S   FFK+S K  F+  +++ +
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFF 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,337
Number of Sequences: 336
Number of extensions: 5357
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)