Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1346
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    90   3e-19
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    60   4e-10
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    51   2e-07
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    32   0.088
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    32   0.088
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     29   0.62 
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   4.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   7.6  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 42/87 (48%), Positives = 53/87 (60%)
 Frame = +1

Query: 256 SVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAY 435
           ++HY GTL +G KFDSS DR  PF   +G   +I  W  GVP M  GE   LT  P+Y Y
Sbjct: 24  TMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGY 83

Query: 436 GASGSPPKIPPNATLQFEIEMIDWNWK 516
           G  G P  IPPN+TL F++E++  N K
Sbjct: 84  GPRGFPGLIPPNSTLLFDVELLAINDK 110


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 31/81 (38%), Positives = 48/81 (59%)
 Frame = +1

Query: 259 VHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYG 438
           + Y+G L +G  FD +  + +PF F LG+  VI  W +GV  M++G    +T     AYG
Sbjct: 280 MRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYG 338

Query: 439 ASGSPPKIPPNATLQFEIEMI 501
            + S P IP N+TL FE++++
Sbjct: 339 -NQSIPGIPKNSTLVFEVKLV 358


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 46/85 (54%)
 Frame = +1

Query: 256 SVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAY 435
           S+ Y+G L +G  FD +    +PF F LG + VI+ W +G+  M+ G    +      AY
Sbjct: 280 SMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAY 338

Query: 436 GASGSPPKIPPNATLQFEIEMIDWN 510
           G S   P IP N+ L F+++++  N
Sbjct: 339 G-SKRLPGIPANSDLVFDVKLLAVN 362


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 32.3 bits (70), Expect = 0.088
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 452 GLPLAP*AYSGAQVRMQTSPFFIVGTPIFHASITPSLPKQNSNGSF 315
           G P+ P AYSG+    +TS   I  TP      +PSL  Q +  SF
Sbjct: 313 GSPIPPTAYSGSSC--ETSQHTIANTPFLAYDRSPSLTNQEAESSF 356


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 32.3 bits (70), Expect = 0.088
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 265  YVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYG 438
            Y+G+LLDG         +  F   LG DGV+ AW++ V +++   +  + C    +YG
Sbjct: 1209 YLGSLLDGGTKKVLVSPDSSFFVTLGSDGVVRAWQL-VESVR--HISTMRCECRLSYG 1263


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 476 VAFGGIFGGLPLAP*AYSGAQVRMQTSPFFIVGTPIFHASITPSLPKQNSNGSFL 312
           + F  + GGLP       G    M  + F  + TP+ H S +P L  Q  +G+F+
Sbjct: 162 LGFSFLTGGLPSLVVLGFGIISAMIVNFFDSIHTPVVHRSNSPKLNSQKVSGTFI 216


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 8   LWLVLFCSFISIEVSRKYRIHNIKALIS*NRTFTN 112
           +W+++F SFI +  S +Y  + + AL    +TF N
Sbjct: 3   IWILIFFSFIKLVSSLQYTGNGVLALDFVAKTFPN 37


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -3

Query: 425 SGAQVRMQTSPFFIVGTPIFHASIT---PSLPK-QNSNGSFLSLLESNLVPSSS 276
           S + V +QTS   I+ +PI  +S+T    S P   +S     +   S+L+PSSS
Sbjct: 547 SNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSSLIPSSS 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,777,362
Number of Sequences: 5004
Number of extensions: 86800
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)