Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1346
(841 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 84 2e-16
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_42625| Best HMM Match : FKBP_C (HMM E-Value=0.0058) 55 8e-08
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9) 37 0.018
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09) 36 0.054
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 25 3.2
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.2
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 29 6.2
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 29 6.2
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 6.2
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 6.2
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.2
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.2
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 29 6.2
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.2
SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.2
SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0) 28 8.2
SB_2199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 83.8 bits (198), Expect = 2e-16
Identities = 39/83 (46%), Positives = 54/83 (65%)
Frame = +1
Query: 256 SVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAY 435
S+HY G L +G KFDSS DR + F+F LGK VI+ W+ G+ M GE LT P AY
Sbjct: 49 SMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAY 108
Query: 436 GASGSPPKIPPNATLQFEIEMID 504
G +G+ IPP+ATL ++E+++
Sbjct: 109 GENGAGAAIPPHATLYMDVELVE 131
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 56.0 bits (129), Expect = 4e-08
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 VHYVGTLLDGTKFDSSRDRN---EPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEY 429
VHY G + DG+ FD++RD +PFEF +G VI+ ++ GV M G+ + P
Sbjct: 123 VHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPAL 182
Query: 430 AYGASGS---PPKIP-PNATLQFEIEMID 504
AYG GS P + N TL + +E+ D
Sbjct: 183 AYGKKGSGDVPGNLDLTNTTLTYNLELFD 211
>SB_42625| Best HMM Match : FKBP_C (HMM E-Value=0.0058)
Length = 84
Score = 54.8 bits (126), Expect = 8e-08
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 636 DSKIFDQRTVTFSLGEGTEHNICEGIERALEKFLKDEKSRL-ITSLNMPLSPK-EFRIGC 809
D K+F++R V F+ GEGTE + EG+E A+ EKS++ I + P+ ++G
Sbjct: 8 DGKVFEEREVEFTFGEGTEAGLLEGVEEAIGNMTNKEKSKIFIQPGKYGVGPEGNPQLGL 67
Query: 810 PPNSVVEYVV 839
PPN+++ Y++
Sbjct: 68 PPNALITYII 77
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 38.7 bits (86), Expect = 0.006
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +2
Query: 155 DQGVDITKNGDRGVLKRITREGEGTETPNQGC 250
+ GVDIT D GV KRI EG G E N GC
Sbjct: 861 EYGVDITPKKDGGVRKRILSEGHGAEMANVGC 892
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 259 VHYVGTLLDGTKFDSSRDRNEPFEFCLGK 345
V YVG L+G +FDS+ PFEF LG+
Sbjct: 896 VRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923
>SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9)
Length = 110
Score = 37.1 bits (82), Expect = 0.018
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +1
Query: 370 IGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDW 507
IGV TM+KGE+ EY + G P++ P AT+ +E+E++ +
Sbjct: 8 IGVSTMRKGELSRFLFDKEYVFKDLGCEPRV-PGATVMWEVELLSF 52
>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
Length = 372
Score = 35.5 bits (78), Expect = 0.054
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 292 KFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTC 417
+ D SR +PFE +GK +E W+ + TM+ EV TC
Sbjct: 111 ELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 25.4 bits (53), Expect(2) = 3.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 259 VHYVGTLLD----GTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPT 384
V Y G LL+ G FDS+ ++ F+F GK VI+ VP+
Sbjct: 127 VKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKGIPGRVPS 172
Score = 22.6 bits (46), Expect(2) = 3.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 445 GSPPKIPPNATLQFEIEMIDWNWKI 519
G P ++P + L FE+E++ K+
Sbjct: 165 GIPGRVPSESPLLFEVEVLRHTTKV 189
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 811 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 839
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 117 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 145
>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 295
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 213 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 241
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 103 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 131
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 349 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 377
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 533 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 561
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 323 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 351
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 20 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 48
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 566 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 594
>SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 719
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 525 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 553
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 408 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 436
>SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 546
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 473
E+G L DL +SKWQ NPSKC
Sbjct: 341 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 369
>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
Length = 603
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 154 GSGSRYYKEWRSWSPKTNYQGRRGY--RNS*PR-MPWSVHYVGTLLDGTKFDSSRDRNEP 324
G+GS Y +EWR + K RRGY + + P+ PW++ G G K D +
Sbjct: 101 GAGSEYGREWREEARKR----RRGYMPKTADPKSAPWALKIGGKA--GKKEAGINDNSNY 154
Query: 325 FEFCLGKDGVIEA 363
+ DG EA
Sbjct: 155 YILTQCPDGAFEA 167
>SB_2199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 334 KIRTVRFCPCWNQTWYHLVVSQHNARSMASLVRSFGTLSFPGNSF*DSTISI 179
K+ + CP WN+ ++V A S A+ S T S S +S IS+
Sbjct: 9 KMSQLHLCPPWNRQTVIIIVPMSKANSAANTSTSDATSSATNVSSDESDISV 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,614,006
Number of Sequences: 59808
Number of extensions: 642277
Number of successful extensions: 1654
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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