Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1346
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              30   0.023
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   8.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 30.3 bits (65), Expect = 0.023
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 295  TWYHLVVSQHNARSMASLVRSFGTLSFPGNS 203
            TWYHL V+ HN    A     F TL+  G +
Sbjct: 1528 TWYHLRVTAHNNAGFAVAEYEFATLTVTGGT 1558



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 586 PTMVHWSQLN*KGDCKVIAKYSIREQL 666
           P  + W+  N + D K  ++Y+IRE++
Sbjct: 805 PIGILWNMNNKRLDPKSDSRYTIREEI 831


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 182 HSL*YRLPDPQSLFYFSNQTFFKN 111
           H+L Y  P  ++L+Y + ++  K+
Sbjct: 262 HNLYYNSPSSENLYYVNTESLMKS 285


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 472 HLEGFLVGCHLLRRHIQEHKSECKLH 395
           + E   V    L+ HI+ H   CK H
Sbjct: 21  YCEKVYVSLGALKMHIRTHTLPCKCH 46


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 742 SFKNFSRALSIPSHILCSV 686
           SF NF + ++  S+++C V
Sbjct: 46  SFTNFDKGINWRSYVVCDV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,142
Number of Sequences: 438
Number of extensions: 6008
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)