Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1345
         (806 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CB73E Cluster: hypothetical protein TTHERM_0034...    34   4.8  
UniRef50_Q82XU0 Cluster: ABC transporter, fused permease and ATP...    33   6.4  
UniRef50_Q7PRX6 Cluster: ENSANGP00000019772; n=3; Diptera|Rep: E...    33   8.5  

>UniRef50_UPI00006CB73E Cluster: hypothetical protein
           TTHERM_00348040; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00348040 - Tetrahymena
           thermophila SB210
          Length = 1700

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 411 LFKL*EEIVLFKILERNEKYFVCIQNRRVDL--FHQFYITR 295
           + KL   I++FKI + NEK + C+QN ++ +   +Q  ITR
Sbjct: 360 VIKLYSPIIVFKIFKSNEKAYFCLQNGQLQIIDMNQILITR 400


>UniRef50_Q82XU0 Cluster: ABC transporter, fused permease and ATPase
           domains; n=4; Betaproteobacteria|Rep: ABC transporter,
           fused permease and ATPase domains - Nitrosomonas
           europaea
          Length = 736

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 791 FLSHWKMSFDNCSKSLFSHVHLLC 720
           F+SHWK  F+ C+ SLFS++  +C
Sbjct: 154 FISHWKTLFELCAGSLFSNLLAIC 177


>UniRef50_Q7PRX6 Cluster: ENSANGP00000019772; n=3; Diptera|Rep:
           ENSANGP00000019772 - Anopheles gambiae str. PEST
          Length = 457

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 421 QRQAVSTLTHMNRARVTNNVFLSITALYALFMASKVKDRQPGSKCIDPLFSFQTGR 588
           Q+Q   T  H ++A V NNV L+           KVKD +P  +     F  QT R
Sbjct: 179 QQQQQQTQQHQSQAHVQNNVILNKMVTGGTVAGGKVKDNKPRGRMTAYAFFVQTCR 234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,376,392
Number of Sequences: 1657284
Number of extensions: 14499349
Number of successful extensions: 30823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30818
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)