Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1345
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)                     29   3.4  
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)                  29   4.4  

>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
          Length = 430

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +1

Query: 283 LAKNPCNIKLMKQINSPILNTNKVFFIPLQNFK*DYFFSQFEEYLCQRQAVSTLTHMNRA 462
           L ++   I L   I  PI  T K+F  P  + K        EE+L      ++ T  N+ 
Sbjct: 268 LVRDTSRINLFSAIRHPIKTTKKLFVNPEDSLKGIILKPNLEEHLSSISIATSNTKRNKG 327

Query: 463 RVTNNVF 483
              N +F
Sbjct: 328 MYRNLLF 334


>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
          Length = 492

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
 Frame = -1

Query: 779 WKMSFDNCSKSLFSHV-----HLLCLYEMLEGVVWEEELT 675
           W++SF N  K+LF+H+     H  C++   +G+ ++E  T
Sbjct: 371 WRLSFSNAEKTLFAHMTELMRHCFCVF---KGIYYQELTT 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,543,326
Number of Sequences: 59808
Number of extensions: 443656
Number of successful extensions: 958
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)