Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1345
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effe...    28   6.8  
AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical ...    28   9.0  

>Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical
           protein F36D1.2 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 PV*YKIDETDQLSDSEYKQSIFHSSPKF*IGLFLLTI 404
           P+  K+DE   L+   Y   IFHS+P F +   + TI
Sbjct: 255 PILLKLDEDTILTVRTYMDYIFHSNPVFLVPTAIFTI 291


>AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical
           protein Y2H9A.1 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 316 KQINSPILNTNKVFFIPLQNFK*DYFFSQFEEYLCQRQAVSTLTHMNRARVTNNVFLSIT 495
           KQ  +PIL       I +Q  +   F S++EE++      +T TH+ R  ++ + F  I 
Sbjct: 55  KQEEAPILTNAPKDIISMQIQETKAFLSEYEEFVDTDYPKTTFTHVPRKFLSVSPFTPIE 114

Query: 496 A 498
           A
Sbjct: 115 A 115


>AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effect
           sterile 4 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 316 KQINSPILNTNKVFFIPLQNFK*DYFFSQFEEYLCQRQAVSTLTHMNRARVTNNVFLSIT 495
           KQ  +PIL       I +Q  +   F S++EE++      +T TH+ R  ++ + F  I 
Sbjct: 55  KQEEAPILTNAPKDIISMQIQETKAFLSEYEEFVDTDYPKTTFTHVPRKFLSVSPFTPIE 114

Query: 496 A 498
           A
Sbjct: 115 A 115


>AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical
           protein Y79H2A.12 protein.
          Length = 175

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 391 FFSQFEEYLCQRQAVSTLTHMNRARVTNNVFLSITALYAL 510
           FFS FE +LC  Q V     + R   T +  L++  LY++
Sbjct: 20  FFSIFELFLCGWQTVLNEDRITRTTGTISAILTLVILYSV 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,299
Number of Sequences: 27780
Number of extensions: 363939
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)