Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1345
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.7  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 194 NFNVVFWANVIRIVTVFIYQN 132
           NF+++F  ++  I+ +FIY N
Sbjct: 4   NFSIMFIHSIFLILIIFIYSN 24


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 194 NFNVVFWANVIRIVTVFIYQN 132
           NF+++F  ++  I+ +FIY N
Sbjct: 4   NFSIMFIHSIFLILIIFIYSN 24


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 353 YFSFLSKILNRTISSHNLKSIYVKGKL 433
           Y    S + N +++ H LK  +VK  L
Sbjct: 577 YLDAKSSVQNYSLAKHQLKEAFVKAHL 603


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 506 AYSAVMLRKTLFVTLALFMCVRVDTACL*HKYSSNCEK 393
           A + + +   LFV  A     R+ T C+   YS  C++
Sbjct: 11  AVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSKECDE 48


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 506 AYSAVMLRKTLFVTLALFMCVRVDTACL*HKYSSNCEK 393
           A + + +   LFV  A     R+ T C+   YS  C++
Sbjct: 11  AVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSKECDE 48


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 506 AYSAVMLRKTLFVTLALFMCVRVDTACL*HKYSSNCEK 393
           A + + +   LFV  A     R+ T C+   YS  C++
Sbjct: 11  AVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSKECDE 48


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 17/78 (21%), Positives = 35/78 (44%)
 Frame = +1

Query: 343 TNKVFFIPLQNFK*DYFFSQFEEYLCQRQAVSTLTHMNRARVTNNVFLSITALYALFMAS 522
           TNK +    +N+K     +Q  EY     A  +L+++ +  V  N  L +  +    ++ 
Sbjct: 439 TNKTWLPVNENYKSLNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSLEVDVIDGRVLSV 498

Query: 523 KVKDRQPGSKCIDPLFSF 576
           K   R+ G+  +  + +F
Sbjct: 499 K---RELGNDTVIVMMNF 513


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 369 ERNEKYFVCIQNRRVDLFHQFYITR 295
           ER++KY+ C      D+F    + R
Sbjct: 209 ERHKKYYPCCDEPYPDIFFNITLRR 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,100
Number of Sequences: 438
Number of extensions: 4578
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)