Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1345
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24535.1 68416.m03081 expressed protein ; expression supporte...    30   2.1  
At4g00430.2 68417.m00060 plasma membrane intrinsic protein, puta...    29   4.8  
At4g00430.1 68417.m00059 plasma membrane intrinsic protein, puta...    29   4.8  
At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (P...    28   6.3  
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    28   8.4  

>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +1

Query: 322 INSPILNTNKVFFIPLQNFK*DYFFSQFEEYLCQRQAVSTLTHMNRARVTNNVFLSITAL 501
           + S I NT K+F   + NFK  +FF+    +   +   +T T++N     +N+  S ++ 
Sbjct: 3   LRSSISNTRKLFQKTIDNFK-SFFFNNGTYHKLPKTPNNTSTNINNDHPNSNIITSSSSS 61

Query: 502 YALFMASKVKD 534
                  K KD
Sbjct: 62  IHKQFQPKPKD 72


>At4g00430.2 68417.m00060 plasma membrane intrinsic protein,
           putative identical to transmembrane protein GI:535780
           from [Arabidopsis thaliana]; very strong similarity to
           SP|Q08733 Plasma membrane intrinsic protein 1C
           (Transmembrane protein B) (TMP-B) {Arabidopsis
           thaliana}; contains Pfam profile PF00230: Major
           intrinsic protein;
          Length = 219

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 766 LIIVVKVYFRMCTFFVFMKCLKALCGKRS*PAPIVAFRPLPY 641
           L +  K+      F++ M+CL A+CG       +  F+P PY
Sbjct: 122 LFLARKLSLTRAVFYMIMQCLGAICG----AGVVKGFQPTPY 159


>At4g00430.1 68417.m00059 plasma membrane intrinsic protein,
           putative identical to transmembrane protein GI:535780
           from [Arabidopsis thaliana]; very strong similarity to
           SP|Q08733 Plasma membrane intrinsic protein 1C
           (Transmembrane protein B) (TMP-B) {Arabidopsis
           thaliana}; contains Pfam profile PF00230: Major
           intrinsic protein;
          Length = 287

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 766 LIIVVKVYFRMCTFFVFMKCLKALCGKRS*PAPIVAFRPLPY 641
           L +  K+      F++ M+CL A+CG       +  F+P PY
Sbjct: 122 LFLARKLSLTRAVFYMIMQCLGAICG----AGVVKGFQPTPY 159


>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C
           (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane
           protein B (TMPB) identical to plasma membrane intrinsic
           protein 1c SP:Q08733 from [Arabidopsis thaliana]
          Length = 286

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 766 LIIVVKVYFRMCTFFVFMKCLKALCGKRS*PAPIVAFRPLPY 641
           L +  K+      F++ M+CL A+CG       +  F+P PY
Sbjct: 121 LFLARKLSLTRAVFYIVMQCLGAICG----AGVVKGFQPNPY 158


>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 806 GEESRFLSHWKMSFDNCSKSLFSH 735
           G + + L  W + F +C KS+F+H
Sbjct: 600 GSQDKNLKIWGLDFGDCHKSIFAH 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,836
Number of Sequences: 28952
Number of extensions: 322216
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)