Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1344X
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   1.5  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   2.7  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -2

Query: 296  LVLANNSEPHC 264
            +VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 191 QVRLAQSSIRLLKELEARGRPKGGNNV 271
           Q+R  Q S+ LLK LE  G  K  +NV
Sbjct: 210 QIRFHQKSLDLLKGLEMNGFSKKRDNV 236


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 102  SLIFLYCEEWVQGVAGIHQALVEHSSQHLL 191
            S ++LY  EW+  +      L+   S+HLL
Sbjct: 1115 SQVYLYLREWINALFDRFTFLLGKESEHLL 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,195,926
Number of Sequences: 5004
Number of extensions: 18316
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)