Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1344X
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0599 - 4457770-4458449,4458575-4458944                           27   2.3  
01_06_1290 - 36023353-36024096                                         27   4.1  
07_03_0269 + 16091600-16091935,16092028-16092192                       26   5.4  
06_01_1061 + 8562039-8562485                                           25   9.4  
01_02_0028 - 10340253-10340619,10341110-10341615                       25   9.4  
01_01_0470 - 3464634-3466520                                           25   9.4  

>07_01_0599 - 4457770-4458449,4458575-4458944
          Length = 349

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 82  ILKYFNLV*SSYIVKSGCRESLAFIRPWWSI 174
           +L YFN V +S ++++GC  S       WS+
Sbjct: 180 LLSYFNRVAASSLIRTGCMPSFDLETEQWSM 210


>01_06_1290 - 36023353-36024096
          Length = 247

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 137 GSRWHSSGLGGAFKPTLAQVRL 202
           G R   +GLGGA   TLAQV L
Sbjct: 99  GGRLQCAGLGGAAPATLAQVSL 120


>07_03_0269 + 16091600-16091935,16092028-16092192
          Length = 166

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 152 SSGLGGAFKPTLAQVRLAQSSIRLLKELEARGRPKGGNN 268
           +SG GG    T   +R AQ S   LK + A G   GG +
Sbjct: 2   ASGAGGGTAATERLIRSAQKSTNQLKAMLAGGGGGGGRS 40


>06_01_1061 + 8562039-8562485
          Length = 148

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 229 GA*GSWXAQGWKQCGSLLLARTRYR 303
           GA G+    GW+QC   LLA TR R
Sbjct: 109 GAAGAAGGSGWRQCHQ-LLAGTRLR 132


>01_02_0028 - 10340253-10340619,10341110-10341615
          Length = 290

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 GAGSRWHSSGLGGAFKPTLAQV 196
           GA +RW+  G GG + P+ + V
Sbjct: 28  GAEARWYGGGGGGGYSPSPSPV 49


>01_01_0470 - 3464634-3466520
          Length = 628

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 131 GAGSRWHSSGLGGAFKPTLAQVRLAQSSIRLLKELEARG 247
           GA SR + + L  +   TLA+ R A  ++ LL+E+ +RG
Sbjct: 443 GAVSRPNLALLCSSLLRTLAKCRRAADAMELLEEMMSRG 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,542,800
Number of Sequences: 37544
Number of extensions: 142478
Number of successful extensions: 343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)