Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1344X
         (315 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 839

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 245 GRPKGGNNVVHYYWQEQDTA 304
           G PK  +N V YYW E   A
Sbjct: 63  GEPKVESNTVQYYWMEARVA 82


>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 QSSIRLLKELEARGRPKGGNNVVHYYWQEQDT 301
           Q S+R + E E  GR  GG  V++ YW  QD+
Sbjct: 95  QRSLRSVAE-ERAGRYCGGLRVLNSYWVGQDS 125


>SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 281 NSEPHCFHPWAXHEPQAP*E 222
           N+ P  +HPWA   PQAP E
Sbjct: 95  NASPSQYHPWAY--PQAPWE 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,132,542
Number of Sequences: 59808
Number of extensions: 144326
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)