Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1344X
         (315 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF111858-1|AAF21941.1|  866|Homo sapiens dimethylglycine dehydro...    32   0.41 
X87344-5|CAA60785.1|  748|Homo sapiens TAP1 protein.                   30   1.6  
X66401-2|CAA47025.1|  748|Homo sapiens ABC-transporter protein.        30   1.6  
X57522-1|CAA40741.1|  808|Homo sapiens peptide transporter protein.    30   1.6  
L21208-1|AAC12906.1|  748|Homo sapiens peptide transporter protein.    30   1.6  
L21207-1|AAC12905.1|  748|Homo sapiens peptide transporter protein.    30   1.6  
L21206-1|AAC12904.1|  748|Homo sapiens peptide transporter protein.    30   1.6  
L21205-1|AAC12903.1|  748|Homo sapiens peptide transporter protein.    30   1.6  
L21204-1|AAC12902.1|  748|Homo sapiens peptide transporter protein.    30   1.6  
BX088556-4|CAM26263.1|  808|Homo sapiens transporter 1 ATP-bindi...    30   1.6  
BC014081-1|AAH14081.1|  808|Homo sapiens transporter 1, ATP-bind...    30   1.6  
AY523971-1|AAS55412.1|  748|Homo sapiens TAP1 protein.                 30   1.6  
AL935043-6|CAI18626.1|  808|Homo sapiens transporter 1, ATP-bind...    30   1.6  
AL671681-12|CAI17714.1|  808|Homo sapiens transporter 1, ATP-bin...    30   1.6  
AL669918-8|CAI18140.1|  808|Homo sapiens transporter 1, ATP-bind...    30   1.6  
AB012644-1|BAA32813.1|  227|Homo sapiens TAP1N protein.                30   1.6  
AY523970-1|AAS55411.1|  748|Homo sapiens TAP1 protein.                 29   2.9  
AK130051-1|BAC85286.1|  135|Homo sapiens protein ( Homo sapiens ...    29   2.9  

>AF111858-1|AAF21941.1|  866|Homo sapiens dimethylglycine
           dehydrogenase precursor protein.
          Length = 866

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 134 AGSRWHSSGLGGAFKPTLAQVRLAQSSIRLLKELE 238
           AGS WH++GL   F P +   ++   SI+L ++LE
Sbjct: 86  AGSTWHAAGLTTYFHPGINLKKIHYDSIKLYEKLE 120


>X87344-5|CAA60785.1|  748|Homo sapiens TAP1 protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>X66401-2|CAA47025.1|  748|Homo sapiens ABC-transporter protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>X57522-1|CAA40741.1|  808|Homo sapiens peptide transporter protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 137 RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 196

Query: 296 DTA 304
            TA
Sbjct: 197 PTA 199


>L21208-1|AAC12906.1|  748|Homo sapiens peptide transporter protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>L21207-1|AAC12905.1|  748|Homo sapiens peptide transporter protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>L21206-1|AAC12904.1|  748|Homo sapiens peptide transporter protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>L21205-1|AAC12903.1|  748|Homo sapiens peptide transporter protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>L21204-1|AAC12902.1|  748|Homo sapiens peptide transporter protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>BX088556-4|CAM26263.1|  808|Homo sapiens transporter 1 ATP-binding
           cassette sub-family B (MDR/TAP) protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 137 RATGGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 196

Query: 296 DTA 304
            TA
Sbjct: 197 PTA 199


>BC014081-1|AAH14081.1|  808|Homo sapiens transporter 1, ATP-binding
           cassette, sub-family B (MDR/TAP) protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 137 RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 196

Query: 296 DTA 304
            TA
Sbjct: 197 PTA 199


>AY523971-1|AAS55412.1|  748|Homo sapiens TAP1 protein.
          Length = 748

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>AL935043-6|CAI18626.1|  808|Homo sapiens transporter 1, ATP-binding
           cassette, sub-family Bpha protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 137 RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 196

Query: 296 DTA 304
            TA
Sbjct: 197 PTA 199


>AL671681-12|CAI17714.1|  808|Homo sapiens transporter 1,
           ATP-binding cassette, sub-family Be, 9 (large
           multifunctional pe protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 137 RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 196

Query: 296 DTA 304
            TA
Sbjct: 197 PTA 199


>AL669918-8|CAI18140.1|  808|Homo sapiens transporter 1, ATP-binding
           cassette, sub-family Bpha protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 137 RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 196

Query: 296 DTA 304
            TA
Sbjct: 197 PTA 199


>AB012644-1|BAA32813.1|  227|Homo sapiens TAP1N protein.
          Length = 227

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLLHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>AY523970-1|AAS55411.1|  748|Homo sapiens TAP1 protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGG---AFKPTLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQ 295
           R   GS+  ++G  G   A KP  A + LA   + L +EL + G P   ++    +W   
Sbjct: 77  RATVGSKSENAGAQGWLAALKPLAAALGLALPGLALFRELISWGAPGSADSTRLPHWGSH 136

Query: 296 DTA 304
            TA
Sbjct: 137 PTA 139


>AK130051-1|BAC85286.1|  135|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26541 fis, clone KDN09394. ).
          Length = 135

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 130 GCRESLAFIRPWWSIQANTCSGE 198
           GC E    +R WW++ +  C GE
Sbjct: 30  GCGEKETLLRYWWNVNSYNCYGE 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,001,167
Number of Sequences: 237096
Number of extensions: 782318
Number of successful extensions: 1366
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)