Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1344X
         (315 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p pro...    42   1e-04
AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA ...    42   1e-04
AY119481-1|AAM50135.1| 1288|Drosophila melanogaster GH07148p pro...    29   1.3  
AE014298-1522|AAF47973.2| 1288|Drosophila melanogaster CG1582-PA...    29   1.3  

>AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p
           protein.
          Length = 939

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGGAFKPTLAQVRLAQSSIRLLKELEARGRPKG 259
           RVG    W + GL G F+P+  +++LA+ SI L+K L   G P G
Sbjct: 103 RVGGELPWTACGLAGRFEPSYTELKLAEYSIDLIKRLAENGLPTG 147


>AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA
           protein.
          Length = 939

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +2

Query: 125 RVGAGSRWHSSGLGGAFKPTLAQVRLAQSSIRLLKELEARGRPKG 259
           RVG    W + GL G F+P+  +++LA+ SI L+K L   G P G
Sbjct: 103 RVGGELPWTACGLAGRFEPSYTELKLAEYSIDLIKRLAENGLPTG 147


>AY119481-1|AAM50135.1| 1288|Drosophila melanogaster GH07148p
           protein.
          Length = 1288

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 182 TLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQDT 301
           TL Q+   +  +  + + + RGR  GG+ V H YWQ++ T
Sbjct: 59  TLRQIHGPEFQLDDISKYKDRGR--GGHGVKHSYWQDRGT 96


>AE014298-1522|AAF47973.2| 1288|Drosophila melanogaster CG1582-PA
           protein.
          Length = 1288

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 182 TLAQVRLAQSSIRLLKELEARGRPKGGNNVVHYYWQEQDT 301
           TL Q+   +  +  + + + RGR  GG+ V H YWQ++ T
Sbjct: 59  TLRQIHGPEFQLDDISKYKDRGR--GGHGVKHSYWQDRGT 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,723,714
Number of Sequences: 53049
Number of extensions: 229174
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 631882260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)