Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1344X
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical
           protein K08E3.3b protein.
          Length = 610

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 152 SSGLGGAF-KPTLAQVRLAQSSIRLLKELEARGRPKGGNN 268
           + G GG   K + ++ R+ ++ + +LKE EA  +P+  NN
Sbjct: 304 ADGSGGKLLKSSPSKNRIIRNFLGILKEKEADEKPEASNN 343


>Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical
           protein K08E3.3a protein.
          Length = 608

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 152 SSGLGGAF-KPTLAQVRLAQSSIRLLKELEARGRPKGGNN 268
           + G GG   K + ++ R+ ++ + +LKE EA  +P+  NN
Sbjct: 304 ADGSGGKLLKSSPSKNRIIRNFLGILKEKEADEKPEASNN 343


>Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical
           protein F34D10.2 protein.
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 261 ETMWFTIIGKNKIPHDXL 314
           ETMWFT +G N    D L
Sbjct: 217 ETMWFTAVGLNSAMADKL 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,763,896
Number of Sequences: 27780
Number of extensions: 106251
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)