Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1343
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   2.9  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   6.8  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 328 YFATARKGVVQNVVAEKLDCFVPWQHCQGRSCSNVESPTLE 206
           +  TAR G VQ  + E +     W+  +G  C ++E P ++
Sbjct: 376 FLHTARCGSVQRTIKEIIHIEGNWKLWKGLGCPSLEKPLVD 416


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 311 KGCSAKCGCRKVGLFCSLATLSRPIML 231
           K C   C    +  FC LAT+S  ++L
Sbjct: 231 KACMGHCSGHPLAAFCGLATISSYLVL 257


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 523 FYYAYFS-RKMCIATYLSKWFF 585
           +YY + S R +  AT++++WFF
Sbjct: 346 YYYEFTSPRTISTATFIARWFF 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,939
Number of Sequences: 5004
Number of extensions: 52301
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)