Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1343
         (764 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113840-1|AAI13841.1|  274|Homo sapiens SRCRB4D protein protein.      33   1.5  
AJ312755-1|CAC84764.1|  575|Homo sapiens scavenger receptor cyst...    33   1.5  
AJ306913-1|CAC88128.1|  575|Homo sapiens SRCRB-S4D protein protein.    33   1.5  

>BC113840-1|AAI13841.1|  274|Homo sapiens SRCRB4D protein protein.
          Length = 274

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 461 VYYQVQVWLGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLL 336
           ++ + ++ +G QLD K WGW+L D +  P    LP A   LL
Sbjct: 1   MHKEAEMLIGPQLDEKRWGWRLGDGSAAP--PFLPQALSFLL 40


>AJ312755-1|CAC84764.1|  575|Homo sapiens scavenger receptor
           cysteine-rich protein, SRCRB-S4D protein.
          Length = 575

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 461 VYYQVQVWLGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLL 336
           ++ + ++ +G QLD K WGW+L D +  P    LP A   LL
Sbjct: 1   MHKEAEMLIGPQLDEKRWGWRLGDGSAAP--PFLPQALSFLL 40


>AJ306913-1|CAC88128.1|  575|Homo sapiens SRCRB-S4D protein protein.
          Length = 575

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 461 VYYQVQVWLGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLL 336
           ++ + ++ +G QLD K WGW+L D +  P    LP A   LL
Sbjct: 1   MHKEAEMLIGPQLDEKRWGWRLGDGSAAP--PFLPQALSFLL 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,839,801
Number of Sequences: 237096
Number of extensions: 1892954
Number of successful extensions: 4318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4318
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)