Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1343
         (764 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001410-1|AAN71165.1|  447|Drosophila melanogaster GH10677p pro...    29   9.2  
AY060334-1|AAL25373.1|  383|Drosophila melanogaster GH22264p pro...    29   9.2  
AE013599-3818|AAF47167.1|  447|Drosophila melanogaster CG3257-PA...    29   9.2  

>BT001410-1|AAN71165.1|  447|Drosophila melanogaster GH10677p
           protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 166 TAPIAIPDRYQTNLQE--LVTQHSSMIGLDSVAREQNSPTFLQPHFALHPFLQLQNIVLR 339
           T P   P  Y+  L+E   ++QH   + LDS    QNS      + + H   QL +  L 
Sbjct: 107 TVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRR-SSANSSRHSAAQL-SAALE 164

Query: 340 SFSGAGGS 363
             +G GG+
Sbjct: 165 QLAGNGGA 172


>AY060334-1|AAL25373.1|  383|Drosophila melanogaster GH22264p
           protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 166 TAPIAIPDRYQTNLQE--LVTQHSSMIGLDSVAREQNSPTFLQPHFALHPFLQLQNIVLR 339
           T P   P  Y+  L+E   ++QH   + LDS    QNS      + + H   QL +  L 
Sbjct: 43  TVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRR-SSANSSRHSAAQL-SAALE 100

Query: 340 SFSGAGGS 363
             +G GG+
Sbjct: 101 QLAGNGGA 108


>AE013599-3818|AAF47167.1|  447|Drosophila melanogaster CG3257-PA,
           isoform A protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 166 TAPIAIPDRYQTNLQE--LVTQHSSMIGLDSVAREQNSPTFLQPHFALHPFLQLQNIVLR 339
           T P   P  Y+  L+E   ++QH   + LDS    QNS      + + H   QL +  L 
Sbjct: 107 TVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRR-SSANSSRHSAAQL-SAALE 164

Query: 340 SFSGAGGS 363
             +G GG+
Sbjct: 165 QLAGNGGA 172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,414,732
Number of Sequences: 53049
Number of extensions: 572398
Number of successful extensions: 1531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)