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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1343
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    30   2.1  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    30   2.1  
AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical ...    29   2.7  
U53335-6|AAA96171.2|  518|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 365 LLPPAPEKLLNTIFCNCKKGCSAKCGCR 282
           LLPP  EK LN  F   K GC     CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 365 LLPPAPEKLLNTIFCNCKKGCSAKCGCR 282
           LLPP  EK LN  F   K GC     CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 365 LLPPAPEKLLNTIFCNCKKGCSAKCGCR 282
           LLPP  EK LN  F   K GC     CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539


>AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical
           protein C41H7.4 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 210 RVGDSTFEHDRP*QCCQGTKQSNFSATT 293
           R GDS F H  P Q   G+  SNFS+ T
Sbjct: 213 RGGDSYFGHGPPPQMVMGSSASNFSSAT 240


>U53335-6|AAA96171.2|  518|Caenorhabditis elegans Hypothetical
           protein C55C3.5 protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 437 LGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLLNTIFCNC 315
           L   LD  DW ++ +D  +     ++PP   + L+T+   C
Sbjct: 289 LNEILDQIDWNFEWMDEQIPVTSPIIPPDSREFLSTLCSEC 329


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -1

Query: 437 LGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLLNTIFCNCKKGC 303
           L    D  DW WK +D T+E    L P    K+    F N  + C
Sbjct: 726 LDEPADGVDWMWKSVDGTIE--LPLKPETKNKMERKAFFNSHEFC 768


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,008
Number of Sequences: 27780
Number of extensions: 299671
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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