Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1343
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.19 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 763 KLAAIRHLLFTGEEKTTVFKMFEKKDLLQCAEVFKNSNSTQQHVI 629
           K+  +R L     EK   FKM E++  +Q  +  +      QHVI
Sbjct: 391 KIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVI 435


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 216 GDSTFEHDRP*QCCQGTKQSNFSATTFC 299
           G   ++ +R   CCQ + +   S + FC
Sbjct: 65  GSKIWQMERSCMCCQESGEREASVSLFC 92


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 323 CNCKKGCSAKCGC 285
           C+C+  C A C C
Sbjct: 755 CDCEMTCPAGCKC 767


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 572 ASGFFGGSVHSKKKLNSVGD 631
           ASG   G  H K+ LN + D
Sbjct: 14  ASGLVNGGSHEKRLLNDLLD 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,527
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)