Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1343
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51750.2 68416.m05675 expressed protein                             31   1.1  
At3g51750.1 68416.m05674 expressed protein                             31   1.1  
At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /...    29   3.4  
At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase carboxyl...    28   5.9  
At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase carboxyl...    28   5.9  
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    28   7.8  
At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /...    28   7.8  
At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /...    28   7.8  

>At3g51750.2 68416.m05675 expressed protein
          Length = 109

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 316 ARKGVVQNVVAEKLDCFVPWQHCQGRSCSNVESPTLEDSFDTDQES 179
           A+ G++ N+++  +DC       +G+S  N++    ED  + +QES
Sbjct: 34  AKGGILNNLISNFMDCTTTT--VEGKSSENIQKSLCEDEDEKEQES 77


>At3g51750.1 68416.m05674 expressed protein
          Length = 110

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 316 ARKGVVQNVVAEKLDCFVPWQHCQGRSCSNVESPTLEDSFDTDQES 179
           A+ G++ N+++  +DC       +G+S  N++    ED  + +QES
Sbjct: 34  AKGGILNNLISNFMDCTTTT--VEGKSSENIQKSLCEDEDEKEQES 77


>At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile PF02485: Core-2/I-Branching enzyme
          Length = 447

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 410 WGWKLIDNTLEPVQTLLPPAPEKLLNTIFCNCKKGCSAKCG 288
           WGW     T+    T    +PE   +T+ CN K+  +   G
Sbjct: 295 WGWDNFPRTILMYYTNFVSSPEGYFHTVICNSKEFINTAIG 335


>At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit family contains Pfam
           profile: PF03255: Acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit
          Length = 769

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 175 IAIPDRYQTNLQELVTQHSSMIGLDSVAREQNSPTFLQP-HFALHPFLQL 321
           I + ++Y+  L++L T H + I   ++AR  N PTFL   H     F++L
Sbjct: 130 ITLENKYRQALKDLYT-HLTPIQRVNIARHPNRPTFLDHIHNITDKFMEL 178


>At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit family contains Pfam
           profile: PF03255: Acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit
          Length = 769

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 175 IAIPDRYQTNLQELVTQHSSMIGLDSVAREQNSPTFLQP-HFALHPFLQL 321
           I + ++Y+  L++L T H + I   ++AR  N PTFL   H     F++L
Sbjct: 130 ITLENKYRQALKDLYT-HLTPIQRVNIARHPNRPTFLDHIHNITDKFMEL 178


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 490 EVGGREVS*LVFYYAYFSRKMCIATYLSKW 579
           ++ G  +  +VF+Y Y SRK    T  SKW
Sbjct: 345 DLAGLAILGIVFFYIYQSRKRKTVTATSKW 374


>At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 424

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 410 WGWKLIDNTLEPVQTLLPPAPEKLLNTIFCN 318
           WGW  +  TL    T    +PE    T+ CN
Sbjct: 273 WGWDNLPRTLLMYYTNFVSSPEGYFQTVICN 303


>At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 424

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 410 WGWKLIDNTLEPVQTLLPPAPEKLLNTIFCN 318
           WGW  +  TL    T    +PE    T+ CN
Sbjct: 273 WGWDNLPRTLLMYYTNFVSSPEGYFQTVICN 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,740
Number of Sequences: 28952
Number of extensions: 268898
Number of successful extensions: 688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)