Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1342
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    30   0.33 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   1.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.1  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   4.1  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   4.1  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   4.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   4.1  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   5.4  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.1  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   7.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.4  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.4  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   9.4  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = +2

Query: 269 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 433
           P   H + GE        +  GE     P +H EL  H    H    E+   HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 37  SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 216
           S SK+    +A S  +  ++ D P+ +T   S L+ F+T  +    +  + VLPS  D  
Sbjct: 26  SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81

Query: 217 TEKTQKSLFDGI 252
               +KS+ D +
Sbjct: 82  NITNKKSVTDNL 93


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 303 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 422
           P  D D I+  +E   F NG+ +FD   +K+  T  K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 327 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 458
           E EKE  K     ENF+  + +  E  E+  L     +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 221 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 90
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 610 TSPLPRQCCHCTKTKIKLVMEDANRSDLHQY*NTRY 503
           TSPLP+  C   K  + L  ++ +RS +H    +RY
Sbjct: 48  TSPLPQISCLLRKDDVPLANKELSRSLIHVQELSRY 83


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +3

Query: 252  RKFDSSQLK-HTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKN 416
            RK   +++K H E+ E  P+  ++  + EKEK+  +      +E+  P    H  T +K+
Sbjct: 792  RKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKS 851

Query: 417  PLPTKDVIEQEKSA 458
            P+     + +++ A
Sbjct: 852  PVEKPKKLRKDRYA 865


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +3

Query: 252 RKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 431
           + FD   +K    +EK  L +     AE EK++  N +E+   +  +       N    K
Sbjct: 74  KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131

Query: 432 DVIEQEK 452
           + +  EK
Sbjct: 132 ETVASEK 138


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -3

Query: 734 HRKFGYYTLIICIRSVYGVHSLFIGVRRDLSLGFE*NPGLLYVAIAQAVLPLYKNKNKTC 555
           + + G Y  I  I  VYG+H L+ G    L   F    G+ +VA  Q    L ++     
Sbjct: 57  YSRHGLYKAIKHIYHVYGLHGLYQGHTATLYRVFP-YAGIKFVAYEQVRRVLIRDPEHET 115

Query: 554 NGRR 543
           + RR
Sbjct: 116 HARR 119


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 601 MATYSNPGFYSNPNDKSRLTPINSEWTP 684
           +++YS+P     P+  S  +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 228 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 124
           G ++G  +S    +LFIGVD     G+  F   LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 336 KEKNKFLNGIENFDPTKLKHTETCEKN 416
           K + K L G ++ DP  L+  + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  VSARIFYPLPHQKYIDSQWPAP*VTLP 91
           VSA  F P+P+  Y D+ + A  V  P
Sbjct: 148 VSANTFIPMPYAHYTDNMYHAKPVNRP 174


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 233 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 135
           FW +S+  S   G  I SL +   RQ + +PSS
Sbjct: 83  FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,467
Number of Sequences: 5004
Number of extensions: 65772
Number of successful extensions: 222
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)