Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1342
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   2.4  
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222           29   4.2  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   4.2  
06_03_0165 - 17399535-17400178,17400378-17400522                       29   5.6  
09_04_0276 - 16306894-16307526,16307556-16308572                       28   7.4  
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    28   9.8  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    28   9.8  
01_06_0241 - 27813076-27813622,27813695-27814125                       28   9.8  

>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 121 DLKSQLEGFNTSCLRDVDTNEKIVL 195
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
          Length = 212

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 128 RVSSKASTPAVSVTSTPMKRLCFR 199
           +VSS++S+P  SVT+  ++ +CFR
Sbjct: 72  QVSSQSSSPVESVTTATLRPICFR 95


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 83  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 175
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>06_03_0165 - 17399535-17400178,17400378-17400522
          Length = 262

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 577 YNGNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 684
           ++G   W   T    G YS   D +RLT I SE  P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256


>09_04_0276 - 16306894-16307526,16307556-16308572
          Length = 549

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 714 YTNYLY*IGLWRPLAVYWRKAR 649
           +T Y Y   LW P   YWR+AR
Sbjct: 111 HTTYNYTDILWSPYGAYWRQAR 132


>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 97  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 189
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 97  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 189
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 88  KELDERMHDLKSELEGYNTGDSDDINKKKAL 118


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 266 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 430
           EP   H  + ++     R +R+     ++ + HR  RS H A  +  V +    H+
Sbjct: 23  EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,312,962
Number of Sequences: 37544
Number of extensions: 442079
Number of successful extensions: 1264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)