Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1342
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.81 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 218 LRRPRSLYSTVSKV*FEPAEAHRDSGEEPASGQR 319
           LRR R L +TV++        H DSG   ++ QR
Sbjct: 248 LRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQR 281


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  SVSDTPSLKDLPKVATDLKS 132
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 569 CFCTMATLPGQWRRTATPDFIQIL 640
           C C+M  LPG   +T+T ++ +I+
Sbjct: 684 CNCSMDWLPGINNQTSTREYPRIM 707


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 746 TCIL*VFTKIFYFLIL 793
           TC+L  +T I+Y +IL
Sbjct: 104 TCVLSCWTNIYYIIIL 119


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 746 TCIL*VFTKIFYFLIL 793
           TC+L  +T I+Y +IL
Sbjct: 157 TCVLSCWTNIYYIIIL 172


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 121 DLKSQLEGFNTSCLRDVDTNEKIV 192
           +LKS L    + C++++ T ++I+
Sbjct: 21  ELKSGLHTVQSVCMKEIGTAQQII 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,377
Number of Sequences: 438
Number of extensions: 4937
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)