Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1340
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O77332 Cluster: Putative uncharacterized protein MAL3P3...    36   1.4  
UniRef50_P58145 Cluster: Ribosomal operon-associated A protein; ...    33   5.6  

>UniRef50_O77332 Cluster: Putative uncharacterized protein
           MAL3P3.16; n=3; Plasmodium|Rep: Putative uncharacterized
           protein MAL3P3.16 - Plasmodium falciparum (isolate 3D7)
          Length = 1673

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 404 YLIKIFLHTYILDKTN*LKYFFYYSTFFFNIRYSL 508
           Y  K   H+  +  TN LKY FY+  F+FN+ YSL
Sbjct: 173 YFDKYIYHSKNIPMTN-LKYLFYFHLFYFNMNYSL 206


>UniRef50_P58145 Cluster: Ribosomal operon-associated A protein;
           n=1; Euglena longa|Rep: Ribosomal operon-associated A
           protein - Astasia longa (Euglenophycean alga)
          Length = 519

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 350 KEFFRIEYRQRNGEQKQNYLIKIFLHTYILDKTN*LKYFFYYSTFFFN 493
           K F ++ Y   N   K NY+ K +L+  +    N LKYF   + F FN
Sbjct: 167 KNFMKLYYFTINFNNKFNYMNKKWLYKNLTFNINFLKYFLKLNNFIFN 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,521,878
Number of Sequences: 1657284
Number of extensions: 10086130
Number of successful extensions: 19309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19302
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)