Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1340
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   6.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.7  

>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 447 VLSNMYVCKNILIK*FCFCSPFLCRYSIRKNSFFCHHSDQPVEL 316
           +L N+ +CK ++ +         C +    + F  H+SD+ +EL
Sbjct: 15  ILKNLAICKELISQ--AAAKGAKCIFFPEASDFIAHNSDEAIEL 56


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 398 QNYLIKIFLHTYILDKTN*LKYFFYYSTFFF 490
           + + I IF+H Y  +      +FFY+S F F
Sbjct: 89  RRFHIAIFIHPYDSNVVPFFCFFFYFSLFSF 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,533
Number of Sequences: 5004
Number of extensions: 45412
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)