Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1338X
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.2  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   8.1  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.1  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = -3

Query: 355 TRAYTIL---FHSLQSAVYDC 302
           T  YT L   +H+L  A YDC
Sbjct: 56  TCRYTFLLEWYHTLSKACYDC 76


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 120 LWSKKRTRSHVLRSNEKPIEWNPKPLV 200
           LW    ++  +LRS++  ++   K LV
Sbjct: 133 LWGVSFSKKQILRSDDLAVKTTSKSLV 159


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 432 RKHVYIHTDSRP 467
           R+H+ +HT  RP
Sbjct: 54  RRHLRVHTGERP 65


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 410 LAKFLEVEETCVYS 451
           LAKF+    TC+Y+
Sbjct: 175 LAKFMIFTSTCIYT 188


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 432 RKHVYIHTDSRP 467
           R+H+ +HT  RP
Sbjct: 207 RRHLRVHTGERP 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,254
Number of Sequences: 336
Number of extensions: 2782
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)