Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1338X
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    84   1e-17
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    46   2e-06
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    27   1.6  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    27   1.6  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    27   1.6  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    27   2.1  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   3.6  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   4.8  
SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...    25   6.3  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   8.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.4  

>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 37/79 (46%), Positives = 54/79 (68%)
 Frame = +2

Query: 260 NFGSTSFLSLDKNETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVEET 439
           NF S +FL L +N+ I + A+  + + G+G+CGP GFYGT D HL LE+ +A F+ VE  
Sbjct: 131 NFASFNFLDLAENKHITECAVATLRECGLGACGPPGFYGTQDKHLRLEKDIASFIGVERA 190

Query: 440 CVYSYGFSTIASAIPSYAK 496
            VY+  F TI+S IP+++K
Sbjct: 191 IVYAQSFQTISSVIPAFSK 209



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +3

Query: 75  TLVIALQVVFITTYYLWSKKRTR--SHVLRSNEKPI-----EWNPKPLVEYDVEVEE 224
           T +  L +VF   YY+  K RT   ++ +   EK I     +W P+PLV    +VE+
Sbjct: 50  TFIEFLLLVF-AAYYVLRKPRTSPDNNYVEFTEKEINELVDDWKPEPLVAELTDVEK 105


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +2

Query: 257 LNFGSTSFLSLDKNETIIDSALK-AMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVE 433
           LN  S ++L   ++     + ++ AM+KYG+ +C      GT  +H E+EE  A F+   
Sbjct: 190 LNVSSYNYLGFAQSHGPCATKVEEAMQKYGLSTCSSNAICGTYGLHKEVEELTANFVGKP 249

Query: 434 ETCVYSYGFSTIAS 475
              V+S GFST A+
Sbjct: 250 AALVFSQGFSTNAT 263


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 66  GWWTLVIALQVVFITTYY-LWSK 131
           G+W LV  L ++F+T +Y  W+K
Sbjct: 114 GFWCLVCTLALIFLTYFYETWTK 136


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 66  GWWTLVIALQVVFITTYY-LWSK 131
           G+W LV  L ++F+T +Y  W+K
Sbjct: 114 GFWCLVCTLALIFLTYFYETWTK 136


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 66  GWWTLVIALQVVFITTYY-LWSK 131
           G+W LV  L ++F+T +Y  W+K
Sbjct: 114 GFWCLVCTLALIFLTYFYETWTK 136


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +3

Query: 111 TYYLWSKKRTRSHVLRSNEKPIEWNPKPLVEYDVEVE 221
           TY+L +    RS VL   +K IE NPK  V Y +EVE
Sbjct: 47  TYHLHALFLGRSPVLL--QKLIENNPKGDVHYTIEVE 81


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 66  GWWTLVIALQVVFITTYY-LWSK 131
           G+W LV  L ++F+T +Y  W K
Sbjct: 114 GFWCLVCTLALIFLTYFYETWVK 136


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 66  GWWTLVIALQVVFITTYY-LWSK 131
           G+W  V  L ++F+T +Y  W+K
Sbjct: 114 GFWCFVCTLALIFLTYFYETWTK 136


>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 119 VIGCDKNYLQGNNQGPPAGHVVT 51
           ++G +K Y  GN    PAG  +T
Sbjct: 38  IVGTEKKYATGNKSQDPAGQHLT 60


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 315 LSMIVSFLSKDKKLVEPKFKNFHLMFPLLEVPRLPHHTRPMVLGS 181
           LS  + F  +   L    +  F L FP+ E+P L   T  +V+ S
Sbjct: 48  LSKTLKFPVRTSGLAMLLYSRFQLFFPVNEIPLLECATACLVVAS 92


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 293  KNETIIDSALKAMEKYGVGSCGPRGFYGTI 382
            K E + D  +K  +KYG  S     FY  I
Sbjct: 1607 KLEALTDGCIKCSQKYGRNSRSRSSFYSLI 1636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,879
Number of Sequences: 5004
Number of extensions: 46388
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)