Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1338X
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)         68   5e-12
SB_28731| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-10
SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07)         41   5e-04
SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)                 39   0.003
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   2.1  
SB_41276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           29   2.8  
SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)                  28   3.7  
SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7)                    27   8.6  

>SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)
          Length = 391

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = +2

Query: 224 TSNNGNIK*KFLNFGSTSFLSLDKNETII-DSALKAMEKYGVGSCGPRGFYGTIDVHLEL 400
           T N    K K LN GS ++L   +NE +  D A K++ K G+  C  R  +GT+D+H+EL
Sbjct: 93  TFNFTGTKTKALNLGSYNYLGFAENEGLCADEAEKSVHKNGIAVCSARHEFGTLDIHIEL 152

Query: 401 EERLAKFLEVEETCVYSYGFSTIASAIP 484
           E+ +A+F+  E   V+  GF+T ++ IP
Sbjct: 153 EKMVARFVGKESAMVFGMGFATNSTNIP 180


>SB_28731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/37 (72%), Positives = 32/37 (86%)
 Frame = +2

Query: 386 VHLELEERLAKFLEVEETCVYSYGFSTIASAIPSYAK 496
           VHL LEERLAKF+  EE  +YSYGFST+ASAIP+Y+K
Sbjct: 2   VHLHLEERLAKFMHTEEAILYSYGFSTVASAIPAYSK 38


>SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07)
          Length = 252

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 32/52 (61%)
 Frame = +2

Query: 296 NETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVEETCVYS 451
           N  ++++A +A+ KYG G    R   GT D+H  LE +++KF  +E+  +Y+
Sbjct: 2   NAEVVNAAKEALMKYGNGLSSVRFICGTQDIHKTLEAKISKFHGMEDAILYA 53


>SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)
          Length = 595

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/36 (41%), Positives = 26/36 (72%)
 Frame = +2

Query: 377 TIDVHLELEERLAKFLEVEETCVYSYGFSTIASAIP 484
           T+D+H+ELE+ +A+F+  E   V+  GF+T ++ IP
Sbjct: 2   TLDIHIELEKMVARFVGKESAMVFGMGFATNSTNIP 37


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 249 HLMFPLLEVPRLPHHTRPMVLGSTQL 172
           H   PLL   ++PHH RP +L S QL
Sbjct: 14  HQRPPLLPSQQIPHHQRPPLLPSQQL 39



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 234 LLEVPRLPHHTRPMVLGSTQLASH 163
           LL   ++PHH RP +L S Q+  H
Sbjct: 5   LLPSQQIPHHQRPPLLPSQQIPHH 28


>SB_41276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 269 STSFLSL-DKNETIIDSALKAMEKYGVG 349
           +  +LSL +KN+  ++S L  MEK+GVG
Sbjct: 69  NAQYLSLNEKNKATVESVLFLMEKFGVG 96


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 440 MFPLPLGTWQGVLLTQDAHL*CHKSL*VHTS 348
           + P+P+ T  G  L  DA+L  H  L +HTS
Sbjct: 209 LIPIPVATHHGYGLRSDAYLRFHTGLSLHTS 239


>SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)
          Length = 482

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +3

Query: 42  YIDSHDMAGWWTLV------IALQVVFITTYYLWSKKRTRSHVLRSN-EKPIEWN 185
           +I SH +AG++  V        L  + + +Y+L+SKK  +S   R   E    WN
Sbjct: 243 FIHSHHLAGFYVFVGVFFLTAILLAIVVDSYWLYSKKHVKSERARERAELAKAWN 297


>SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7)
          Length = 329

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 290 DKNETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLA 415
           D    II S  +  E  G+G+  P   Y   D H  LE+  A
Sbjct: 173 DSESDIISSGPRVPESSGIGTPSPAPLYFLYDSHRALEDARA 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,124
Number of Sequences: 59808
Number of extensions: 336294
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)