Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1338X
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoy...   113   9e-26
U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoy...   113   9e-26
Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    48   5e-06
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      29   1.4  
AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine re...    28   4.3  

>U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform b protein.
          Length = 434

 Score =  113 bits (271), Expect = 9e-26
 Identities = 51/82 (62%), Positives = 65/82 (79%)
 Frame = +2

Query: 251 KFLNFGSTSFLSLDKNETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEV 430
           K+LN  ST+FLS    + I D A + + KYGVGSCGPRGFYGT+DVHL+LE+ LAKF+  
Sbjct: 63  KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGC 122

Query: 431 EETCVYSYGFSTIASAIPSYAK 496
           EE  +YSYGF+T++SAIP+YAK
Sbjct: 123 EEAVLYSYGFATVSSAIPAYAK 144


>U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform a protein.
          Length = 458

 Score =  113 bits (271), Expect = 9e-26
 Identities = 51/82 (62%), Positives = 65/82 (79%)
 Frame = +2

Query: 251 KFLNFGSTSFLSLDKNETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEV 430
           K+LN  ST+FLS    + I D A + + KYGVGSCGPRGFYGT+DVHL+LE+ LAKF+  
Sbjct: 87  KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGC 146

Query: 431 EETCVYSYGFSTIASAIPSYAK 496
           EE  +YSYGF+T++SAIP+YAK
Sbjct: 147 EEAVLYSYGFATVSSAIPAYAK 168


>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 24/68 (35%), Positives = 41/68 (60%)
 Frame = +2

Query: 257 LNFGSTSFLSLDKNETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVEE 436
           +NF + ++L L  +  +I +  KA+E +G G    R   GT D+H ELE+++A+F   E+
Sbjct: 70  INFCANNYLGLSSHPEVIAAGQKALETHGAGLSSVRFICGTQDIHKELEQKIAQFHGTED 129

Query: 437 TCVYSYGF 460
           T +Y+  F
Sbjct: 130 TILYAACF 137


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 257 LNFGSTSFLSLDKNETIIDSALKA-MEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVE 433
           +N GS ++L       +   A  A ++KYG+   G R   G    H  +E  +A++L VE
Sbjct: 137 INLGSYNYLGFSHRSGVCAEAAAAHIDKYGINCGGSRQEIGNHVAHKSVESTIAQYLNVE 196

Query: 434 ETCVYSYGFSTIASAIPS 487
           +  V+  GF+T +  IPS
Sbjct: 197 DAIVFPMGFATNSMNIPS 214


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 215 SRGTSNNGNIK*KFLNFGSTSFLSLDKNETIIDSALKAMEKYG 343
           +R    NGN+K KF  +  T  L+L KN  I+   + ++ ++G
Sbjct: 52  TRHPLKNGNLKMKFTAWNDTYHLNLRKNSRIVSPHIISVVRHG 94


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 215 SRGTSNNGNIK*KFLNFGSTSFLSLDKNETIIDSALKAMEKYG 343
           +R    NGN+K KF  +  T  L+L KN  I+   + ++ ++G
Sbjct: 52  TRHPLKNGNLKMKFTAWNDTYHLNLRKNSRIVSPHIISVVRHG 94


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 215 SRGTSNNGNIK*KFLNFGSTSFLSLDKNETIIDSALKAMEKYG 343
           +R    NGN+K KF  +  T  L+L KN  I+   + ++ ++G
Sbjct: 52  TRHPLKNGNLKMKFTAWNDTYHLNLRKNSRIVSPHIISVVRHG 94


>AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine
           receptor, class i protein36 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 21  GIK*KMIYIDSHDMAGWWTLVIALQVVFITTYYLWSKKRTRSHVLRSNE 167
           G+  K+  I SH +   WT ++  ++V +T  + W  ++      R N+
Sbjct: 80  GVLVKVFNIYSHYLLAVWTSLLISEIVCLTICFAWKHRKISKLANRLND 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,640
Number of Sequences: 27780
Number of extensions: 255830
Number of successful extensions: 591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)