Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1338X
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.58 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.4  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  WLLPCK*FLSQPITYGQKNERGPMFFAAM-RSQLSGTQNHWSSMMWKS 219
           ++LP    +   I    K  R  M  A + R+ LSG  NHW S   KS
Sbjct: 230 FVLPMTIIIVLYILIAIKLRRSRMLTATVNRNHLSGGTNHWDSGRRKS 277


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 72  WTLVIALQVVFITTYYLWSKKRTRSHVL 155
           W  +  LQ  F    Y W+  +  SH+L
Sbjct: 311 WVAINELQDSFWLEQYSWALFKAMSHML 338


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 72  WTLVIALQVVFITTYYLWSKKRTRSHVL 155
           W  +  LQ  F    Y W+  +  SH+L
Sbjct: 279 WVAINELQDSFWLEQYSWALFKAMSHML 306


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 467 WSRIRMNIHMF 435
           W+R+RMN  MF
Sbjct: 130 WARLRMNSGMF 140


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 467 WSRIRMNIHMF 435
           W+R+RMN  MF
Sbjct: 130 WARLRMNSGMF 140


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 107 DKNYLQGNNQGPPAGHVVTIYINHFLFNSSKI 12
           DK + +     PPA  ++   I+ + FN +KI
Sbjct: 357 DKVFKETLRMYPPASILMRKAISDYTFNDTKI 388


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 434 PLPLGTWQGVL 402
           PLP+  W GVL
Sbjct: 80  PLPIEPWHGVL 90


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 434 PLPLGTWQGVL 402
           PLP+  W GVL
Sbjct: 80  PLPIEPWHGVL 90


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 432 RKHVYIHTDSRP 467
           R+H+ +HT  RP
Sbjct: 54  RRHLRVHTGERP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,452
Number of Sequences: 438
Number of extensions: 3608
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)